Factsheet for TraesCS4D01G151900.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 26917684

gfp PMID: 26917684 doi

N Jiang, RE Wiemels, A Soya, R Whitley, M Held, A Faik

Department of Environmental and Plant Biology (N.J., R.E.W., A.S., R.W., A.F.) and Department of Chemistry and Biochemistry (M.H.), Ohio University, Athens, Ohio 45701 faik@ohio.edu., Department of Environmental and Plant Biology (N.J., R.E.W., A.S., R.W., A.F.) and Department of Chemistry and Biochemistry (M.H.), Ohio University, Athens, Ohio 45701.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G166900.1	Wheat	cytosol	89.49	99.46
TraesCS4B01G144900.1	Wheat	cytosol, extracellular, golgi, unclear	89.24	99.18
HORVU4Hr1G038960.2	Barley	cytosol, plasma membrane	88.75	97.84
Os03t0599800-01	Rice	extracellular	83.62	93.96
Zm00001d033174_P001	Maize	plasma membrane	82.89	93.13
Zm00001d013751_P005	Maize	plastid	82.89	93.13
EER91258	Sorghum	cytosol	81.66	91.76
TraesCS3D01G298600.1	Wheat	cytosol, unclear	77.02	88.73
Solyc04g005340.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	77.26	88.52
PGSC0003DMT400004878	Potato	cytosol, extracellular	77.75	87.6
Solyc05g012070.2.1	Tomato	extracellular	77.51	87.57
PGSC0003DMT400072896	Potato	cytosol, mitochondrion	76.77	86.74
TraesCS2D01G553900.1	Wheat	cytosol	18.83	76.24
TraesCS2D01G181700.1	Wheat	golgi	77.75	73.78
VIT_05s0020g03250.t01	Wine grape	cytosol	11.98	64.47
GSMUA_Achr2P13620_001	Banana	cytosol	31.54	60.85
TraesCS2D01G498900.1	Wheat	cytosol, golgi, unclear	37.65	44.25

Protein Annotations

EnsemblPlants:TraesCS4D01G151900.2	EnsemblPlantsGene:TraesCS4D01G151900	GO:GO:0003674	GO:GO:0003824	GO:GO:0016866	InterPro:IPR029044
InterPro:Nucleotide-diphossugar_trans	InterPro:RGP_fam	KEGG:00520+5.4.99.30	PANTHER:PTHR31682	PANTHER:PTHR31682:SF13	PFAM:PF03214
SEG:seg	SUPFAM:SSF53448	MapMan:3.13.7.3	:	:	:

Description

No Description!

Coordinates

chr4D:+:179312460..179314536

Molecular Weight (calculated)

46332.0 Da

IEP (calculated)

6.652

GRAVY (calculated)

-0.157

Length

409 amino acids

Sequence
(BLAST)

001: MAGTVTVPGS SVPSTPLLKD ELDIVIPTIR NLDFLEMWRP FFQPYHLIIV QDGDPSKVIK VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYVFTID DDCFVAKDPS GKDINALEQH IKNLLSPSTP FFFNTLYDPY REGADFVRGY PFSLREGAPT AVSHGLWLNI PDYDAPTQMV KPRERNSRYV
201: DAVLTIPKGT LFPMCGMNLA FDRQLIGPAM YFGLMGDGQP IGRYDDMWAG WCVKVCIYLT ELQLVFTLNF RNEIFSSQKK KGTEEMKLIQ LCKLQVICDH
301: LSLGVKTGLP YLWHSKASNP FVNLKKEYKG IFWQEDIIPF FQNATLSKEC DTVQKCYISL SEQVKEKLGK IDPYFVKLAD AMVTWIEAWD ELNPSDAVVA
401: AGNGKAAAK

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.