Factsheet for Zm00001d033174_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23353019
plasma membrane: 23508561
nucleus: 24677780
plasma membrane: 27341663

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013751_P005	Maize	plastid	97.8	97.8
EER91258	Sorghum	cytosol	96.7	96.7
Os03t0599800-01	Rice	extracellular	93.41	93.41
TraesCS4A01G166900.1	Wheat	cytosol	93.13	92.12
TraesCS4B01G144900.1	Wheat	cytosol, extracellular, golgi, unclear	93.13	92.12
HORVU4Hr1G038960.2	Barley	cytosol, plasma membrane	92.31	90.57
Solyc04g005340.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	88.46	90.2
PGSC0003DMT400004878	Potato	cytosol, extracellular	88.74	88.98
Solyc05g012070.2.1	Tomato	extracellular	87.91	88.4
PGSC0003DMT400072896	Potato	cytosol, mitochondrion	87.09	87.57
Zm00001d022085_P001	Maize	cytosol, plastid	85.16	85.87
TraesCS4D01G151900.2	Wheat	cytosol, golgi	93.13	82.89
Zm00001d006820_P001	Maize	cytosol	78.85	78.2
VIT_05s0020g03250.t01	Wine grape	cytosol	13.46	64.47
GSMUA_Achr2P13620_001	Banana	cytosol	35.16	60.38
Zm00001d042881_P001	Maize	extracellular	9.34	50.0
Zm00001d012683_P001	Maize	cytosol, nucleus, peroxisome	45.05	48.81
Zm00001d014000_P001	Maize	plastid	34.07	42.03
Zm00001d001979_P002	Maize	extracellular, vacuole	44.51	38.3

Protein Annotations

KEGG:00520+5.4.99.30	MapMan:3.13.7.3	UniProt:B4FQX1	EMBL:BT039509	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016866
GO:GO:0030244	GO:GO:0071669	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	ProteinID:ONM06916.1	PFAM:PF03214
PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF13	InterPro:RGP	InterPro:RGP_fam	SUPFAM:SSF53448
UniParc:UPI000014F1BB	EnsemblPlantsGene:Zm00001d033174	EnsemblPlants:Zm00001d033174_P001	EnsemblPlants:Zm00001d033174_T001	SEG:seg	:

Description

Golgi associated protein homolog Golgi associated protein homolog

Coordinates

chr1:-:252797116..252799804

Molecular Weight (calculated)

41232.5 Da

IEP (calculated)

5.983

GRAVY (calculated)

-0.233

Length

364 amino acids

Sequence
(BLAST)

001: MAGTVTVPGS STPSTPLLKD ELDIVIPTIR NLDFLEMWRP FFQPYHLIIV QDGDPTKTIK VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIYTID DDCFVAKDPS GKDINALEQH IKNLLSPSTP FFFNTLYDPY REGADFVRGY PFSLREGAHT AVSHGLWLNI PDYDAPTQLV KPKERNERYV
201: DAVMTIPKGT LFPMCGMNLA FDRDLIGPAM YFGLMGDGQP IGRYDDMWAG WCVKVICDHL SLGVKTGLPY IWHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QNVTIPKDCD TVQKCYIYLS GQVKEKLGTI DPYFVKLGDA MVTWIEAWDE LNPSTPAAAN GKAK

Best Arabidopsis Sequence Match ( AT5G15650.1 )
(BLAST)

001: MVEPANTVGL PVNPTPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKKIH VPEGYDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSSP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRDLIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL SLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEEIIPFF
301: QNAKLSKEAV TVQQCYIELS KMVKEKLSSL DPYFDKLADA MVTWIEAWDE LNPPAASGKA

Arabidopsis Description

RGP2RGP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UG61]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.