Factsheet for Zm00001d022085_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97509	Sorghum	cytosol	98.61	98.61
TraesCS2B01G200900.1	Wheat	cytosol	92.52	92.78
Os07t0604800-01	Rice	cytosol, plasma membrane	93.07	91.8
GSMUA_AchrUn_...	Banana	cytosol	65.1	90.73
GSMUA_Achr6P35020_001	Banana	cytosol	65.65	88.43
Zm00001d006820_P001	Maize	cytosol	88.92	87.47
GSMUA_Achr4P23520_001	Banana	cytosol	65.1	87.04
HORVU2Hr1G033100.1	Barley	cytosol, golgi, mitochondrion	92.24	86.95
GSMUA_Achr10P...	Banana	cytosol	78.95	85.84
KRH70960	Soybean	endoplasmic reticulum	86.98	85.33
KRH75101	Soybean	endoplasmic reticulum	86.98	85.33
Zm00001d033174_P001	Maize	plasma membrane	85.87	85.16
Zm00001d013751_P005	Maize	plastid	85.6	84.89
TraesCS2A01G174400.1	Wheat	golgi	91.97	77.39
TraesCS2D01G181700.1	Wheat	golgi	92.24	77.26
Zm00001d042881_P001	Maize	extracellular	9.7	51.47
Zm00001d012683_P001	Maize	cytosol, nucleus, peroxisome	43.49	46.73
Zm00001d014000_P001	Maize	plastid	36.29	44.41
Zm00001d001979_P002	Maize	extracellular, vacuole	45.43	38.77

Protein Annotations

KEGG:00520+5.4.99.30	MapMan:3.13.7.3	EMBL:BT063058	UniProt:C0P439	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016866	GO:GO:0030244	GO:GO:0071669	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	ProteinID:ONM59471.1
PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF13	InterPro:RGP	InterPro:RGP_fam
SUPFAM:SSF53448	UniParc:UPI0001948B89	EnsemblPlantsGene:Zm00001d022085	EnsemblPlants:Zm00001d022085_P001	EnsemblPlants:Zm00001d022085_T001	:

Description

UDP-arabinopyranose mutase 3

Coordinates

chr7:+:169769393..169772957

Molecular Weight (calculated)

40945.5 Da

IEP (calculated)

7.072

GRAVY (calculated)

-0.222

Length

361 amino acids

Sequence
(BLAST)

001: MASASHAPTP LLKDELDIVI PTIRNLDFLE MWRPFFQPYH LIIVQDGDPS KIIRVPEGFD YELYNRNDIN RMLGPKASCI SFKDSACRCF GYMVSKKKYI
101: YTIDDDCFVA KDPLGKDINA LEQHIKNLLS PSTPFFFNTL YDPYRVGADF VRGYPFSLRE GVPTAVSHGL WLNIPDYDAP TQLVKPLERN TRYVDAILTI
201: PKGTLFPMCG MNLAFDRELI GPAMYFGLMG DGQPIGRYDD MWAGWCTKVI TDHLGLGVKT GLPYIWHSKA SNPFVNLKKE YNGIFWQEEL IPFFQSVSLP
301: KEATTVQKCY LELAKQVRAK LGKVDGYFNK LADSMVTWIE AWDELNPPKG GVPTANGPPK K

Best Arabidopsis Sequence Match ( AT3G08900.1 )
(BLAST)

001: MAQLYSSVKP TPMLKDELDI VIPTIRNLDF LEMWRPFFEQ YHLIIVQDGD PSKVINIPVG FDYELYNRND INRILGPKAS CISFKDSACR CFGYMVSKKK
101: YIYTIDDDCF VAKDPTGKEI NALEQHIKNL LSPSTPHFFN TLYDPYRDGA DFVRGYPFSM REGAITAVSH GLWLNIPDYD APTQLVKPLE KNSRYVDAVM
201: TIPKGTLFPM CGMNLAFDRE LIGPAMYFGL MGDGQPIGRY DDMWAGWCVK VICDHMGWGV KTGLPYIWHS KASNPFVNLK KEYNGIFWQE EAIPFFQSVT
301: LPKECTSVQQ CYLELAKLVR EKLGKVDPYF ITLATGMVTW IEAWEELNSA EGTEAEAPKG KN

Arabidopsis Description

RGP3Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.