CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 21107622
nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 21107622 doi

N Ahsan, T Nakamura, S Komatsu

National Institute of Crop Science, 2-1-18 Kannondai, Tsukuba, 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75101	Soybean	endoplasmic reticulum	95.65	95.65
GSMUA_Achr6P35020_001	Banana	cytosol	65.76	90.3
KRH01363	Soybean	endoplasmic reticulum, nucleus	85.87	89.52
GSMUA_AchrUn_...	Banana	cytosol	62.77	89.19
KRH45087	Soybean	endoplasmic reticulum	85.05	88.67
GSMUA_Achr4P23520_001	Banana	cytosol	64.95	88.52
KRH18345	Soybean	endoplasmic reticulum, nucleus	85.6	88.24
EER97509	Sorghum	cytosol	86.14	87.81
GSMUA_Achr4P32910_001	Banana	cytosol	64.4	87.78
KRG93690	Soybean	cytosol, endoplasmic reticulum	85.05	87.68
TraesCS2B01G200900.1	Wheat	cytosol	85.33	87.22
Zm00001d022085_P001	Maize	cytosol, plastid	85.33	86.98
GSMUA_Achr10P...	Banana	cytosol	77.72	86.14
Os07t0604800-01	Rice	cytosol, plasma membrane	85.05	85.52
KRH54738	Soybean	cytosol, endoplasmic reticulum	82.88	84.25
KRH63176	Soybean	endoplasmic reticulum	82.88	83.79
HORVU2Hr1G033100.1	Barley	cytosol, golgi, mitochondrion	85.33	81.98
Zm00001d006820_P001	Maize	cytosol	78.8	79.02
TraesCS2A01G174400.1	Wheat	golgi	85.05	72.96
TraesCS2D01G181700.1	Wheat	golgi	85.33	72.85
Zm00001d042881_P001	Maize	extracellular	9.24	50.0
Zm00001d014000_P001	Maize	plastid	34.51	43.05
KRH40343	Soybean	cytosol, extracellular, plastid	45.11	38.88
KRH00886	Soybean	cytosol, peroxisome, plastid	44.02	37.94

Protein Annotations

KEGG:00520+5.4.99.30	MapMan:3.13.7.3	EMBL:ACUP02000832	EnsemblPlantsGene:GLYMA_02G120900	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829
GO:GO:0005975	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009832
GO:GO:0009987	GO:GO:0016866	GO:GO:0030244	GO:GO:0033356	GO:GO:0052691	GO:GO:0071669
UniProt:I1JEI0	InterPro:IPR029044	EnsemblPlants:KRH70960	ProteinID:KRH70960	ProteinID:KRH70960.1	InterPro:Nucleotide-diphossugar_trans
PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF13	InterPro:RGP	InterPro:RGP_fam
SUPFAM:SSF53448	UniParc:UPI000233793A	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:11938438..11941791

Molecular Weight (calculated)

41521.8 Da

IEP (calculated)

5.751

GRAVY (calculated)

-0.216

Length

368 amino acids

Sequence
(BLAST)

001: MAEPSSSKPA VPLLKDELDI VIPTIRNLDF LEMWRPFFEP YHLIIVQDGD PNRTIKVPDG FDYELYNRND INRILGPKAS CISFKDSACR CFGYMVSKKK
101: YIYTIDDDCF VAKDPSGKDI NALEQHIKNL LCPSTPFFFN TLYDPYRAGA DFVRGYPFSL REGAPTAVSH GLWLNIPDYD APTQLVKPLE RNTRYVDAVL
201: TIPKGTLFPM CGMNLAFDRQ LIGPAMYFGL MGDGQPIGRY DDMWAGWCVK VICDHLGLGV KTGLPYIWHS KASNPFVNLK KEYKGIFWQE EIIPFFQSAT
301: IPKECTSVQK CYIELSKQVK EKLGAVDPYF TKLADAMVTW IEAWDELNST TSEEASSKSA NGAAAATK

Best Arabidopsis Sequence Match ( AT3G08900.1 )
(BLAST)

001: MAQLYSSVKP TPMLKDELDI VIPTIRNLDF LEMWRPFFEQ YHLIIVQDGD PSKVINIPVG FDYELYNRND INRILGPKAS CISFKDSACR CFGYMVSKKK
101: YIYTIDDDCF VAKDPTGKEI NALEQHIKNL LSPSTPHFFN TLYDPYRDGA DFVRGYPFSM REGAITAVSH GLWLNIPDYD APTQLVKPLE KNSRYVDAVM
201: TIPKGTLFPM CGMNLAFDRE LIGPAMYFGL MGDGQPIGRY DDMWAGWCVK VICDHMGWGV KTGLPYIWHS KASNPFVNLK KEYNGIFWQE EAIPFFQSVT
301: LPKECTSVQQ CYLELAKLVR EKLGKVDPYF ITLATGMVTW IEAWEELNSA EGTEAEAPKG KN

Arabidopsis Description

RGP3Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.