Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH63176 | Soybean | endoplasmic reticulum | 95.86 | 95.33 |
| Solyc03g114860.2.1 | Tomato | cytosol, extracellular, unclear | 85.91 | 88.6 |
| VIT_17s0000g05030.t01 | Wine grape | cytosol | 87.02 | 87.99 |
| GSMUA_Achr4P14450_001 | Banana | cytosol | 79.83 | 87.84 |
| PGSC0003DMT400063316 | Potato | cytosol | 87.57 | 86.85 |
| KRH01363 | Soybean | endoplasmic reticulum, nucleus | 82.87 | 84.99 |
| GSMUA_Achr8P28120_001 | Banana | cytosol | 86.74 | 84.41 |
| KRH45087 | Soybean | endoplasmic reticulum | 82.04 | 84.14 |
| KRH18345 | Soybean | endoplasmic reticulum, nucleus | 82.87 | 84.03 |
| GSMUA_Achr3P25300_001 | Banana | cytosol | 66.02 | 82.99 |
| KRG93690 | Soybean | cytosol, endoplasmic reticulum | 81.77 | 82.91 |
| KRH70960 | Soybean | endoplasmic reticulum | 84.25 | 82.88 |
| KRH75101 | Soybean | endoplasmic reticulum | 84.25 | 82.88 |
| CDX73947 | Canola | cytosol | 38.95 | 81.98 |
| Zm00001d012683_P001 | Maize | cytosol, nucleus, peroxisome | 43.92 | 47.32 |
| KRH40343 | Soybean | cytosol, extracellular, plastid | 47.24 | 40.05 |
| KRH00886 | Soybean | cytosol, peroxisome, plastid | 46.69 | 39.58 |
Protein Annotations
| KEGG:00520+5.4.99.30 | EntrezGene:100816315 | MapMan:3.13.7.3 | EMBL:ACUP02003574 | EnsemblPlantsGene:GLYMA_06G205600 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0005829 | GO:GO:0005975 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009832 | GO:GO:0009987 | GO:GO:0016866 | GO:GO:0030244 | GO:GO:0033356 | GO:GO:0052691 |
| GO:GO:0071669 | UniProt:I1KD37 | InterPro:IPR029044 | EnsemblPlants:KRH54738 | ProteinID:KRH54738 | ProteinID:KRH54738.1 |
| InterPro:Nucleotide-diphossugar_trans | PFAM:PF03214 | PIRSF:PIRSF016429 | PANTHER:PTHR31682 | PANTHER:PTHR31682:SF13 | InterPro:RGP |
| InterPro:RGP_fam | SUPFAM:SSF53448 | UniParc:UPI0002339759 | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:19459392..19462658
Molecular Weight (calculated)
40904.2 Da
IEP (calculated)
6.260
GRAVY (calculated)
-0.221
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPGSAAAT AILKEEVDIV IPTIRNLDFL DMWRPFFEGY HLIIVQDGDP SKVIKVPEGF DYELYNRNDI NRVLGPKAHC ISFKDSACRC FGFLLSKKKY
101: IFTIDDDCFV AKDPSGKEIN ALEQHLKNLL SPSTPFFFNT LYDPYREGVD FVRGYPFSLR EGVPTAASHG LWLNIPDYDA PTQLVKPLER NNRYVDAVMT
201: IPKGTLFPMC GMNLAFNREL IGPAMYFGLM GDGQPIGRYD DMWAGWCVKV ISDHLGLGVK TGLPYIWHSK ASNPFVNLKK EYKGIYWQEE LIPFFQSVSL
301: PKECTTAQKC YIELSKQVKA KLGKVDEYFN KLADAMVTWI EAWDELNPSG PKSEALPNGS AK
101: IFTIDDDCFV AKDPSGKEIN ALEQHLKNLL SPSTPFFFNT LYDPYREGVD FVRGYPFSLR EGVPTAASHG LWLNIPDYDA PTQLVKPLER NNRYVDAVMT
201: IPKGTLFPMC GMNLAFNREL IGPAMYFGLM GDGQPIGRYD DMWAGWCVKV ISDHLGLGVK TGLPYIWHSK ASNPFVNLKK EYKGIYWQEE LIPFFQSVSL
301: PKECTTAQKC YIELSKQVKA KLGKVDEYFN KLADAMVTWI EAWDELNPSG PKSEALPNGS AK
001: MAQLYSSVKP TPMLKDELDI VIPTIRNLDF LEMWRPFFEQ YHLIIVQDGD PSKVINIPVG FDYELYNRND INRILGPKAS CISFKDSACR CFGYMVSKKK
101: YIYTIDDDCF VAKDPTGKEI NALEQHIKNL LSPSTPHFFN TLYDPYRDGA DFVRGYPFSM REGAITAVSH GLWLNIPDYD APTQLVKPLE KNSRYVDAVM
201: TIPKGTLFPM CGMNLAFDRE LIGPAMYFGL MGDGQPIGRY DDMWAGWCVK VICDHMGWGV KTGLPYIWHS KASNPFVNLK KEYNGIFWQE EAIPFFQSVT
301: LPKECTSVQQ CYLELAKLVR EKLGKVDPYF ITLATGMVTW IEAWEELNSA EGTEAEAPKG KN
101: YIYTIDDDCF VAKDPTGKEI NALEQHIKNL LSPSTPHFFN TLYDPYRDGA DFVRGYPFSM REGAITAVSH GLWLNIPDYD APTQLVKPLE KNSRYVDAVM
201: TIPKGTLFPM CGMNLAFDRE LIGPAMYFGL MGDGQPIGRY DDMWAGWCVK VICDHMGWGV KTGLPYIWHS KASNPFVNLK KEYNGIFWQE EAIPFFQSVT
301: LPKECTSVQQ CYLELAKLVR EKLGKVDPYF ITLATGMVTW IEAWEELNSA EGTEAEAPKG KN
Arabidopsis Description
RGP3Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.