CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

cytosol 3
golgi 2
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93690	Soybean	cytosol, endoplasmic reticulum	98.6	98.6
KRH01363	Soybean	endoplasmic reticulum, nucleus	90.48	91.5
KRH45087	Soybean	endoplasmic reticulum	89.92	90.93
KRH70960	Soybean	endoplasmic reticulum	88.24	85.6
KRH75101	Soybean	endoplasmic reticulum	87.39	84.78
KRH54738	Soybean	cytosol, endoplasmic reticulum	84.03	82.87
KRH63176	Soybean	endoplasmic reticulum	83.47	81.87
KRH40343	Soybean	cytosol, extracellular, plastid	45.66	38.17
KRH00886	Soybean	cytosol, peroxisome, plastid	44.26	37.0

Protein Annotations

KEGG:00520+5.4.99.30	EntrezGene:100778357	MapMan:3.13.7.3	EMBL:ACUP02008062	EnsemblPlantsGene:GLYMA_13G053000	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005829	GO:GO:0005975	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009832	GO:GO:0009987	GO:GO:0016866	GO:GO:0030244	GO:GO:0033356	GO:GO:0052691
GO:GO:0071669	UniProt:I1LWV7	InterPro:IPR029044	EnsemblPlants:KRH18345	ProteinID:KRH18345	ProteinID:KRH18345.1
InterPro:Nucleotide-diphossugar_trans	PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF15	InterPro:RGP
InterPro:RGP_fam	SUPFAM:SSF53448	UniParc:UPI000233B26B	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:15046821..15050021

Molecular Weight (calculated)

40498.8 Da

IEP (calculated)

5.458

GRAVY (calculated)

-0.194

Length

357 amino acids

Sequence
(BLAST)

001: MADASVAPPP PLKDELDIVI PTIRNLDFLE MWRPFFQPYH LIIVQDGDPT KTIKVPPGFD YELYNRNDIN KLLGPRASCI SFKDSACRCF GYMVSKKKYI
101: FTIDDDCFVA NDPSGKAINA LEQHIKNLLC PSTPLFFNTL YDPFREGADF VRGYPFSLRE GVPTAISHGL WLNIPDYDAP TQLVKPLERN TRYVDAVLTI
201: PKGTLFPMCG MNLAFDRDLI GPAMYFGLMG DGQPIGRYDD MWAGWCCKVI TDHLGLGVKT GLPYIYHSKA SNPFVNLRKE YKGIFWQEDI IPFFQNVVLP
301: KECTTVQKCY IELSKQVKEK LSKIDPYFDK LADAMVTWIE AWDELNPEGA SQANGKA

Best Arabidopsis Sequence Match ( AT5G15650.1 )
(BLAST)

001: MVEPANTVGL PVNPTPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKKIH VPEGYDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSSP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRDLIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL SLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEEIIPFF
301: QNAKLSKEAV TVQQCYIELS KMVKEKLSSL DPYFDKLADA MVTWIEAWDE LNPPAASGKA

Arabidopsis Description

RGP2RGP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UG61]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.