CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70960	Soybean	endoplasmic reticulum	95.65	95.65
GSMUA_AchrUn_...	Banana	cytosol	63.59	90.35
GSMUA_Achr4P23520_001	Banana	cytosol	65.49	89.26
GSMUA_Achr6P35020_001	Banana	cytosol	64.95	89.18
KRH01363	Soybean	endoplasmic reticulum, nucleus	85.33	88.95
TraesCS2B01G200900.1	Wheat	cytosol	86.68	88.61
GSMUA_Achr4P32910_001	Banana	cytosol	64.95	88.52
KRH45087	Soybean	endoplasmic reticulum	84.51	88.1
EER97509	Sorghum	cytosol	86.14	87.81
KRH18345	Soybean	endoplasmic reticulum, nucleus	84.78	87.39
Zm00001d022085_P001	Maize	cytosol, plastid	85.33	86.98
KRG93690	Soybean	cytosol, endoplasmic reticulum	84.24	86.83
GSMUA_Achr10P...	Banana	cytosol	77.99	86.45
Os07t0604800-01	Rice	cytosol, plasma membrane	85.33	85.79
KRH54738	Soybean	cytosol, endoplasmic reticulum	82.88	84.25
HORVU2Hr1G033100.1	Barley	cytosol, golgi, mitochondrion	86.96	83.55
KRH63176	Soybean	endoplasmic reticulum	82.34	83.24
Zm00001d006820_P001	Maize	cytosol	79.08	79.29
TraesCS2A01G174400.1	Wheat	golgi	86.41	74.13
TraesCS2D01G181700.1	Wheat	golgi	86.68	74.01
Zm00001d042881_P001	Maize	extracellular	9.24	50.0
Zm00001d014000_P001	Maize	plastid	34.78	43.39
KRH40343	Soybean	cytosol, extracellular, plastid	45.11	38.88
KRH00886	Soybean	cytosol, peroxisome, plastid	44.57	38.41

Protein Annotations

KEGG:00520+5.4.99.30	EntrezGene:100788017	MapMan:3.13.7.3	EMBL:ACUP02000121	EnsemblPlantsGene:GLYMA_01G063000	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005829	GO:GO:0005975	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009832	GO:GO:0009987	GO:GO:0016866	GO:GO:0030244	GO:GO:0033356	GO:GO:0052691
GO:GO:0071669	UniProt:I1J637	InterPro:IPR029044	EnsemblPlants:KRH75101	ProteinID:KRH75101	ProteinID:KRH75101.1
InterPro:Nucleotide-diphossugar_trans	PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF6	InterPro:RGP
InterPro:RGP_fam	SUPFAM:SSF53448	UniParc:UPI0002336FA5	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:8921298..8924709

Molecular Weight (calculated)

41713.1 Da

IEP (calculated)

5.478

GRAVY (calculated)

-0.228

Length

368 amino acids

Sequence
(BLAST)

001: MAQPSSSSKP VVPLLKDELD IVIPTIRNLD FLEMWRPFFE PYHLIIVQDG DPNRTINVPE GFDYELYNRN DINRILGPKA SCISFKDSAC RCFGYMVSKK
101: KYIYTIDDDC FVAKDPSGKD INALEQHIKN LLCPSTPFFF NTLYDPYREG ADFVRGYPFS LREGAPTAVS HGLWLNIPDY DAPTQLVKPL ERNTRYVDAV
201: LTIPKGTLFP MCGMNLAFDR QLIGPAMYFG LMGDGQPIGR YDDMWAGWCV KVICDHLGLG VKTGLPYIWH SKASNPFVNL KKEYKGIFWQ EEIIPFFQSA
301: TLSKECTSVQ KCYIELSKQV KEKLGAVDPY FIKLADAMVT WIEAWDELNN NTSEEVPSKP TNGAAAAK

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.