Factsheet for TraesCS2D01G181700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	plastid

golgi: 26917684

golgi: 25769308
unclear: 25769308

gfp PMID: 26917684 doi

N Jiang, RE Wiemels, A Soya, R Whitley, M Held, A Faik

Department of Environmental and Plant Biology (N.J., R.E.W., A.S., R.W., A.F.) and Department of Chemistry and Biochemistry (M.H.), Ohio University, Athens, Ohio 45701 faik@ohio.edu., Department of Environmental and Plant Biology (N.J., R.E.W., A.S., R.W., A.F.) and Department of Chemistry and Biochemistry (M.H.), Ohio University, Athens, Ohio 45701.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G200900.1	Wheat	cytosol	83.29	99.72
TraesCS2A01G174400.1	Wheat	golgi	96.98	97.44
HORVU2Hr1G033100.1	Barley	cytosol, golgi, mitochondrion	85.85	96.61
Zm00001d022085_P001	Maize	cytosol, plastid	77.26	92.24
EER97509	Sorghum	cytosol	77.26	92.24
GSMUA_AchrUn_...	Banana	cytosol	55.22	91.89
Os07t0604800-01	Rice	cytosol, plasma membrane	77.03	90.71
GSMUA_Achr4P23520_001	Banana	cytosol	56.15	89.63
GSMUA_Achr6P35020_001	Banana	cytosol	55.22	88.81
KRH75101	Soybean	endoplasmic reticulum	74.01	86.68
GSMUA_Achr10P...	Banana	cytosol	66.59	86.45
KRH70960	Soybean	endoplasmic reticulum	72.85	85.33
TraesCS3D01G298600.1	Wheat	cytosol, unclear	69.61	84.51
Zm00001d006820_P001	Maize	cytosol	70.53	82.83
TraesCS4D01G151900.2	Wheat	cytosol, golgi	73.78	77.75
TraesCS2D01G553900.1	Wheat	cytosol	16.01	68.32
TraesCS2D01G498900.1	Wheat	cytosol, golgi, unclear	35.5	43.97

Protein Annotations

EnsemblPlants:TraesCS2D01G181700.1	EnsemblPlantsGene:TraesCS2D01G181700	GO:GO:0003674	GO:GO:0003824	GO:GO:0016866	InterPro:IPR029044
InterPro:Nucleotide-diphossugar_trans	InterPro:RGP_fam	KEGG:00520+5.4.99.30	PANTHER:PTHR31682	PANTHER:PTHR31682:SF13	PFAM:PF03214
SEG:seg	SUPFAM:SSF53448	MapMan:3.13.7.3	:	:	:

Description

No Description!

Coordinates

chr2D:-:126736655..126739659

Molecular Weight (calculated)

48515.5 Da

IEP (calculated)

9.284

GRAVY (calculated)

-0.328

Length

431 amino acids

Sequence
(BLAST)

001: MTSKGKKGKR NSPHRPRPVH SVRPSRPGPA LNPRPASSFL IYPVRFPHLS APRPTTACPP VPASADARLA AMATPTTPLL KDELDIVIPT IRNLDFLEMW
101: RPFFQPYHLI IVQDGDPTKV IKVPEGFDYE LYNRNDVNRI LGPKASCISF KDSACRCFGY MVSKKKYIYT IDDDCFVAKD PSGKDINALE QHIKNLLSPS
201: TPFFFNTLYD PYREGADFVR GYPFSLREGA PTAVSHGLWL NIPDYDAPTQ LVKPRERNNR YVDAVLTIPK GTLFPMCGMN LAFDRELIGP AMYFGLMGDG
301: QPIGRYDDMW AGWCTKVITD HLSLGIKTGL PYIWHSKASN PFVNLKKEYN GIFWQEELIP FFQSVTLSKE ATTVQKCYLE LAKQVRAKLG KVDGYFNKLA
401: DAMVTWIEAW DELNPPKGAI TTTNGPALKS K

Best Arabidopsis Sequence Match ( AT5G15650.1 )
(BLAST)

001: MVEPANTVGL PVNPTPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKKIH VPEGYDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSSP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRDLIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL SLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEEIIPFF
301: QNAKLSKEAV TVQQCYIELS KMVKEKLSSL DPYFDKLADA MVTWIEAWDE LNPPAASGKA

Arabidopsis Description

RGP2RGP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UG61]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.