CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
golgi 2
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01363	Soybean	endoplasmic reticulum, nucleus	98.58	98.58
KRH18345	Soybean	endoplasmic reticulum, nucleus	90.93	89.92
KRG93690	Soybean	cytosol, endoplasmic reticulum	90.37	89.36
KRH70960	Soybean	endoplasmic reticulum	88.67	85.05
KRH75101	Soybean	endoplasmic reticulum	88.1	84.51
KRH54738	Soybean	cytosol, endoplasmic reticulum	84.14	82.04
KRH63176	Soybean	endoplasmic reticulum	83.29	80.77
KRH40343	Soybean	cytosol, extracellular, plastid	46.46	38.41
KRH00886	Soybean	cytosol, peroxisome, plastid	45.61	37.7

Protein Annotations

KEGG:00520+5.4.99.30	EntrezGene:100783948	MapMan:3.13.7.3	EMBL:ACUP02004990	EnsemblPlantsGene:GLYMA_08G249900	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005829	GO:GO:0005975	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009832	GO:GO:0009987	GO:GO:0016866	GO:GO:0030244	GO:GO:0033356	GO:GO:0052691
GO:GO:0071669	UniProt:I1KWI0	InterPro:IPR029044	EnsemblPlants:KRH45087	ProteinID:KRH45087	ProteinID:KRH45087.1
InterPro:Nucleotide-diphossugar_trans	PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF15	InterPro:RGP
InterPro:RGP_fam	SUPFAM:SSF53448	UniParc:UPI0001BA8545	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:21839373..21841951

Molecular Weight (calculated)

40155.5 Da

IEP (calculated)

5.702

GRAVY (calculated)

-0.141

Length

353 amino acids

Sequence
(BLAST)

001: MASATPLLKD ELDIVIPTIR NLDFLEMWRP FFEPYHLIIV QDGDPSKIIK VPEGFDYELY NRNDINRILG PKANCISFKD SACRCFGYMV SKKKYIYTID
101: DDCFVATDPS GHKINALKQH IENLLCPSTP YFFNTLYEPF REGADFVRGY PFSLREGVPT AVSHGLWLNI PDYDAPTQLV KPLERNTRYV DAILTIPKGT
201: LFPMCGMNLA FDRDLIGAAM YFGLMGDGQP IGRYDDMWAG WCCKVICDHL GLGIKTGLPY IYHSKASNPF VNLRKEYKGI FWQEDIIPFF QSIVLPKEAT
301: TVQKCYIELA KQVKEKLSKV DPYFDKLADA MVTWIEAWDE LNPAGASVAN GKA

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.