CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

cytosol 2
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45087	Soybean	endoplasmic reticulum	98.58	98.58
KRH18345	Soybean	endoplasmic reticulum, nucleus	91.5	90.48
KRG93690	Soybean	cytosol, endoplasmic reticulum	90.93	89.92
KRH70960	Soybean	endoplasmic reticulum	89.52	85.87
KRH75101	Soybean	endoplasmic reticulum	88.95	85.33
KRH54738	Soybean	cytosol, endoplasmic reticulum	84.99	82.87
KRH63176	Soybean	endoplasmic reticulum	84.14	81.59
KRH40343	Soybean	cytosol, extracellular, plastid	47.03	38.88
KRH00886	Soybean	cytosol, peroxisome, plastid	46.18	38.17

Protein Annotations

KEGG:00520+5.4.99.30	EntrezGene:100784882	MapMan:3.13.7.3	UniProt:A0A0R0FDT6	EMBL:ACUP02011511	EnsemblPlantsGene:GLYMA_18G272200
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005829	GO:GO:0005975	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009832	GO:GO:0009987	GO:GO:0016866	GO:GO:0030244	GO:GO:0033356
GO:GO:0052691	GO:GO:0071669	InterPro:IPR029044	EnsemblPlants:KRH01363	ProteinID:KRH01363	ProteinID:KRH01363.1
InterPro:Nucleotide-diphossugar_trans	PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF15	InterPro:RGP
InterPro:RGP_fam	SUPFAM:SSF53448	UniParc:UPI000233EE3F	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:55515800..55518328

Molecular Weight (calculated)

40113.4 Da

IEP (calculated)

5.702

GRAVY (calculated)

-0.145

Length

353 amino acids

Sequence
(BLAST)

001: MASATPLLKD ELDIVIPTIR NLDFLEMWRP FFEPYHLIIV QDGDPSKTIK VPEGFDYELY NRNDINRILG PKANCISFKD SACRCFGYMV SKKKYIYTID
101: DDCFVATDPS GHKINALKQH IENLLCPSTP FFFNTLYEPF REGADFVRGY PFSLREGVPT AVSHGLWLNI PDYDAPTQLV KPLERNTRYV DAVLTIPKGT
201: LFPMCGMNLA FDRDLIGAAM YFGLMGDGQP IGRYDDMWAG WCCKVICDHL GLGIKTGLPY IYHSKASNPF VNLRKEYKGI FWQEDIIPFF QSVVLPKEAT
301: TVQKCYIELA KQVKEKLTKV DPYFDKLADA MVTWIEAWDE LNPAGASVAN GKA

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.