CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00886	Soybean	cytosol, peroxisome, plastid	95.08	95.08
VIT_04s0023g00110.t01	Wine grape	cytosol	61.36	73.39
AT5G16510.2	Thale cress	cytosol	58.31	71.55
Bra008616.1-P	Field mustard	cytosol	58.31	71.55
CDX69446	Canola	cytosol	58.31	71.55
PGSC0003DMT400059506	Potato	cytosol	58.31	71.55
CDY55583	Canola	cytosol	58.08	71.26
Solyc04g051200.1.1	Tomato	cytosol, unclear	57.85	70.98
Bra023571.1-P	Field mustard	cytosol	15.93	64.15
Os04t0660400-01	Rice	cytosol, plasma membrane, plastid	51.76	63.69
CDX85502	Canola	cytosol	15.93	62.96
EES11595	Sorghum	cytosol	50.82	62.36
HORVU2Hr1G111070.2	Barley	cytosol	50.12	61.49
TraesCS2B01G526700.1	Wheat	cytosol, golgi	49.88	61.21
Zm00001d001979_P002	Maize	extracellular, vacuole	60.19	60.76
TraesCS2D01G498900.1	Wheat	cytosol, golgi, unclear	49.41	60.63
TraesCS2A01G498600.1	Wheat	cytosol, unclear	49.41	60.63
CDY38107	Canola	cytosol	22.01	60.26
Bra006359.1-P	Field mustard	cytosol	14.75	60.0
CDX78695	Canola	cytosol	14.29	58.1
GSMUA_Achr7P00470_001	Banana	cytosol	40.05	49.71
KRH54738	Soybean	cytosol, endoplasmic reticulum	40.05	47.24
KRH01363	Soybean	endoplasmic reticulum, nucleus	38.88	47.03
KRH63176	Soybean	endoplasmic reticulum	40.05	46.98
KRH45087	Soybean	endoplasmic reticulum	38.41	46.46
KRH18345	Soybean	endoplasmic reticulum, nucleus	38.17	45.66
KRH70960	Soybean	endoplasmic reticulum	38.88	45.11
KRH75101	Soybean	endoplasmic reticulum	38.88	45.11
KRG93690	Soybean	cytosol, endoplasmic reticulum	37.7	45.1

Protein Annotations

KEGG:00520+5.4.99.30	EntrezGene:100815848	MapMan:3.13.7.3	UniProt:A0A0R0ID86	EMBL:ACUP02006036	EnsemblPlantsGene:GLYMA_09G252600
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016866	GO:GO:0030244	EnsemblPlants:KRH40343	ProteinID:KRH40343	ProteinID:KRH40343.1
PFAM:PF03214	PANTHER:PTHR31682	PANTHER:PTHR31682:SF4	InterPro:RGP_fam	UniParc:UPI0006ED4D50	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:47268078..47270855

Molecular Weight (calculated)

47327.6 Da

IEP (calculated)

6.316

GRAVY (calculated)

0.146

Length

427 amino acids

Sequence
(BLAST)

001: MKTKTPPSLL SLTVDSAVLN LSDISDLSHV PDHILLDLFL RILKAGKLTE KVLRLFIATG KDEVLSFVQA LNIQHILTPV LPTTVINDNE VDIVIGALHS
101: DLTTFMNEWR PIFSRFHLII VKDPDLKEEL QIPVGFSVDV YTKSQIEQVV GSSTSVRFSG YACRYFGFLI SRKKYVVCID DDCVPAKDNS GILVDAVAQH
201: IVNLQTPATP FFFNTLYDPF CKGADFVRGY PFSLRSGVDC ALSCGLWLNL ADLDAPTQAL KPGQRNLRYV DAVLTVPSRA MVPVSGINIA FNREAVGPAL
301: VPALRLAGEG KLRWETMEDI WCGMCVKVIC DHLGLGVKSG LPYVWRTERG DAIQSLKKEW EGVKLMEDVV PFFQSLRLPQ SATTAEACVV EVAKTVKEHL
401: GKVDPMFSEA AQAMEEWVKL WKSVRSG

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.