Factsheet for Os04t0660400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 4
golgi 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11595	Sorghum	cytosol	89.63	89.37
TraesCS2D01G498900.1	Wheat	cytosol, golgi, unclear	87.9	87.64
TraesCS2B01G526700.1	Wheat	cytosol, golgi	87.61	87.36
HORVU2Hr1G111070.2	Barley	cytosol	87.61	87.36
TraesCS2A01G498600.1	Wheat	cytosol, unclear	87.32	87.07
Zm00001d001979_P002	Maize	extracellular, vacuole	87.32	71.63
VIT_04s0023g00110.t01	Wine grape	cytosol	64.55	62.75
AT5G16510.2	Thale cress	cytosol	61.96	61.78
Bra008616.1-P	Field mustard	cytosol	61.67	61.49
CDX69446	Canola	cytosol	61.38	61.21
CDY55583	Canola	cytosol	61.1	60.92
PGSC0003DMT400059506	Potato	cytosol	61.1	60.92
Solyc04g051200.1.1	Tomato	cytosol, unclear	61.1	60.92
CDX85502	Canola	cytosol	16.71	53.7
Bra023571.1-P	Field mustard	cytosol	16.14	52.83
KRH40343	Soybean	cytosol, extracellular, plastid	63.69	51.76
KRH00886	Soybean	cytosol, peroxisome, plastid	63.4	51.52
Bra006359.1-P	Field mustard	cytosol	15.56	51.43
CDY38107	Canola	cytosol	23.05	51.28
CDX78695	Canola	cytosol	14.99	49.52
GSMUA_Achr7P00470_001	Banana	cytosol	44.09	44.48
Os03t0599800-01	Rice	extracellular	45.53	43.41
Os07t0604800-01	Rice	cytosol, plasma membrane	44.96	42.62

Protein Annotations

KEGG:00520+5.4.99.30	MapMan:3.13.7.3	EntrezGene:4337282	EMBL:AK058644	EMBL:AK071012	EMBL:AK104316
ProteinID:BAF16057.1	ProteinID:BAS91447.1	ProteinID:CAE02896.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009506
GO:GO:0009628	GO:GO:0009651	GO:GO:0009832	GO:GO:0009987	GO:GO:0016043	GO:GO:0016866
GO:GO:0033356	GO:GO:0052691	GO:GO:0071555	GO:GO:0071669	EnsemblPlantsGene:Os04g0660400	EnsemblPlants:Os04t0660400-01
PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF4	UniProt:Q7FAY6	InterPro:RGP
InterPro:RGP_fam	UniParc:UPI000009E323	RefSeq:XP_015635492.1	:	:	:

Description

UDP-ARABINOPYRANOSE MUTASE 2Similar to Amylogenin; reversibly glycosylatable polypeptide (Amylogenin). (Os04t0660400-01);Similar to Amylogenin; reversibly glycosylatable polypeptide (Amylogenin). (Os04t0660400-02);Similar to Amylogenin; reversibly glycosylatable polypeptide (Amylogenin). (Os04t0660400-03)

Coordinates

chr4:+:33704890..33707242

Molecular Weight (calculated)

38908.9 Da

IEP (calculated)

6.402

GRAVY (calculated)

-0.088

Length

347 amino acids

Sequence
(BLAST)

001: MSLEIQDSEV DIVIAALQPN LTTFFEAWRP FFSRFHIIVV KDPDMAEELQ IPTGFDLKVY TKSDMGVLGA TSIDFSGHSC RYFGYLVSRK KYVISIDDNC
101: LPAKDNGGLT VDAVAQHMSN LKTPATPFFF NTLYDPFRKG ADFVRGYPFS LREGVECMLS CGLWLHNADY DPMTHVVKRN QRNTTYVDAV MTVPLGAMMP
201: VSGINVAFNR EVLGPVMFPA LRLRKEGKHR WDTLEDVWNG LCAKVVCDRL RYGVKTGLPY VMRSDAEAGK ALESLKEWEG VKVMDVVLPF FESLKLSSTS
301: VTVEDCVKEL TSIVKEKLGP QNAIFAKAAD AMEEWTKLWK SHGAQSA

Best Arabidopsis Sequence Match ( AT5G16510.1 )
(BLAST)

001: MSLAEINKNE VDIVIGALNA DLTQFLTSWR PFFSGFHLIV VKDPELKEEL NIPEGFDVDV YSKTDMEKVV GASNSTMFSG YSCRYFGYLV SKKKYIVSID
101: DDCVPAKDPK GFLVDAVTQH VINLENPATP LFFNTLYDPY CEGADFVRGY PFSLRSGVPC AASCGLWLNL ADLDAPTQAL KTEKRNTAYV DAVMTVPAKA
201: MLPISGINIA FNRELVGPAL VPALRLAGEG KVRWETLEDV WCGMCLKHIS DHLGYGVKTG LPYVWRNERG DAVESLRKKW EGMKLMEKSV PFFDSLKLPE
301: TALKVEDCVI ELAKAVKEQL GSDDPAFTQA ADAMVKWVQL WNSVNSSA

Arabidopsis Description

RGP5Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q2T5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.