Factsheet for Solyc04g051200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 4
golgi 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059506	Potato	cytosol	97.13	97.13
VIT_04s0023g00110.t01	Wine grape	cytosol	73.85	71.99
AT5G16510.2	Thale cress	cytosol	68.97	68.97
Bra008616.1-P	Field mustard	cytosol	68.39	68.39
CDX69446	Canola	cytosol	68.39	68.39
CDY55583	Canola	cytosol	67.82	67.82
Bra023571.1-P	Field mustard	cytosol	20.11	66.04
CDX85502	Canola	cytosol	20.4	65.74
Bra006359.1-P	Field mustard	cytosol	18.68	61.9
EES11595	Sorghum	cytosol	61.49	61.49
Os04t0660400-01	Rice	cytosol, plasma membrane, plastid	60.92	61.1
CDX78695	Canola	cytosol	18.1	60.0
TraesCS2D01G498900.1	Wheat	cytosol, golgi, unclear	59.2	59.2
CDY38107	Canola	cytosol	26.44	58.97
TraesCS2B01G526700.1	Wheat	cytosol, golgi	58.91	58.91
TraesCS2A01G498600.1	Wheat	cytosol, unclear	58.62	58.62
HORVU2Hr1G111070.2	Barley	cytosol	58.33	58.33
KRH00886	Soybean	cytosol, peroxisome, plastid	70.98	57.85
KRH40343	Soybean	cytosol, extracellular, plastid	70.98	57.85
Solyc03g019750.2.1	Tomato	cytosol	51.15	51.0
Zm00001d001979_P002	Maize	extracellular, vacuole	60.92	50.12
Solyc02g089170.2.1	Tomato	cytosol, unclear	50.57	50.0
Solyc03g070390.2.1	Tomato	cytosol, unclear	50.0	49.71
Solyc03g114860.2.1	Tomato	cytosol, extracellular, unclear	50.0	49.57
Solyc04g005340.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	50.29	49.02
Solyc02g065740.2.1	Tomato	cytosol, unclear	50.29	48.75
Solyc05g012070.2.1	Tomato	extracellular	49.71	47.79

Protein Annotations

KEGG:00520+5.4.99.30	MapMan:3.13.7.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0005975	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009628
GO:GO:0009651	GO:GO:0009832	GO:GO:0009987	GO:GO:0016866	GO:GO:0030244	GO:GO:0033356
GO:GO:0052691	GO:GO:0071669	UniProt:K4BS82	PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682
PANTHER:PTHR31682:SF4	InterPro:RGP	InterPro:RGP_fam	EnsemblPlantsGene:Solyc04g051200.1	EnsemblPlants:Solyc04g051200.1.1	UniParc:UPI0002766F9F

Description

Probable UDP-arabinopyranose mutase 5 [Source:Projected from Arabidopsis thaliana (AT5G16510) UniProtKB/Swiss-Prot;Acc:Q9FFD2]

Coordinates

chr4:-:50066878..50067924

Molecular Weight (calculated)

38965.1 Da

IEP (calculated)

6.299

GRAVY (calculated)

-0.022

Length

348 amino acids

Sequence
(BLAST)

001: MFQVSVRDDE VDIVIAAIEP DLTSFLEEWR AVFSRFHLII IKDPDIKGEL KIPGGFNYDT YTKADIQQII GPSNAATFSG YSCRYFGYLL SKKKYIISID
101: DDCIPAKDTK GIQVDAIAQH INNLSTPATP FFFNTLYDPF CKGADFVRGY PFSLRNGVSC ALSCGLWLNL ADLDAPTQAL KPELRNTRYV DAVLTVPARA
201: MMPMSGINIA FDRELVGPAL LPSFKLAKEG KFRWETVEDV WTGMCVKVVC DHLGYGVKTG LPYVWRKERG NAIGSLKKEW EGVKLMEEVV PFFQSMKLTP
301: AAKTAEDCVI EIAAAVKEQL GRIDPVFTRA ADSMVEWVQL WKAVKTRT

Best Arabidopsis Sequence Match ( AT5G16510.1 )
(BLAST)

001: MSLAEINKNE VDIVIGALNA DLTQFLTSWR PFFSGFHLIV VKDPELKEEL NIPEGFDVDV YSKTDMEKVV GASNSTMFSG YSCRYFGYLV SKKKYIVSID
101: DDCVPAKDPK GFLVDAVTQH VINLENPATP LFFNTLYDPY CEGADFVRGY PFSLRSGVPC AASCGLWLNL ADLDAPTQAL KTEKRNTAYV DAVMTVPAKA
201: MLPISGINIA FNRELVGPAL VPALRLAGEG KVRWETLEDV WCGMCLKHIS DHLGYGVKTG LPYVWRNERG DAVESLRKKW EGMKLMEKSV PFFDSLKLPE
301: TALKVEDCVI ELAKAVKEQL GSDDPAFTQA ADAMVKWVQL WNSVNSSA

Arabidopsis Description

RGP5Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q2T5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.