Factsheet for Solyc03g070390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 4
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, unclear
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089170.2.1	Tomato	cytosol, unclear	91.14	90.62
Solyc03g114860.2.1	Tomato	cytosol, extracellular, unclear	86.57	86.32
Solyc02g065740.2.1	Tomato	cytosol, unclear	88.29	86.07
Solyc05g012070.2.1	Tomato	extracellular	88.29	85.36
VIT_14s0083g01100.t01	Wine grape	cytosol	87.43	85.24
Solyc04g005340.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	86.57	84.87
AT3G08900.1	Thale cress	cytosol	83.14	80.39
Bra001338.1-P	Field mustard	cytosol	83.43	80.22
CDY27964	Canola	cytosol	64.86	79.65
CDY00647	Canola	cytosol	64.29	77.05
CDY64941	Canola	cytosol	75.43	76.97
Bra029728.1-P	Field mustard	cytosol	82.86	76.72
Solyc03g019750.2.1	Tomato	cytosol	76.29	76.5
PGSC0003DMT400019802	Potato	cytosol	59.14	50.37
Solyc04g051200.1.1	Tomato	cytosol, unclear	49.71	50.0
CDY27965	Canola	cytosol	3.43	46.15

Protein Annotations

KEGG:00520+5.4.99.30	MapMan:3.13.7.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0005975	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009832	GO:GO:0009987	GO:GO:0016866
GO:GO:0030244	GO:GO:0033356	GO:GO:0052691	GO:GO:0071669	InterPro:IPR029044	UniProt:K4BHG8
InterPro:Nucleotide-diphossugar_trans	PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF15	InterPro:RGP
InterPro:RGP_fam	SUPFAM:SSF53448	EnsemblPlantsGene:Solyc03g070390.2	EnsemblPlants:Solyc03g070390.2.1	UniParc:UPI00027679FF	:

Description

No Description!

Coordinates

chr3:+:16220110..16222159

Molecular Weight (calculated)

40038.3 Da

IEP (calculated)

5.984

GRAVY (calculated)

-0.203

Length

350 amino acids

Sequence
(BLAST)

001: MASTSPPLKD ELDIVIPTIR NLDFLEMWRP FFQPYHLIIV QDGDPSKSIM VPEGFDYELY NRNDINKILG PRASCISFKD SACRCFGYMI SKKKYIYTID
101: DDCFVAKDPS GKDINALEQH IKNLLCPSTP FFFNTLYEPF RDGADFVRGY PFSLREGVPT AASHGLWLNI PDYDAPTQLV KPLERNTRYV DTVLTIPKGT
201: LFPMCGMNLA FDRDLIGPAM YFGLMGDGQP IGRYDDMWAG WCCKVICDHL GLGIKTGLPY IYHSKASNPF VNLKKEYKGI FWQEEIIPFF QTLTLSKEST
301: SVQKCYIELA RLVKEKLGTI DPYFLKLSEA MVTWIEAWDE LNPPTKHSSK

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.