Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73947 | Canola | cytosol | 46.15 | 6.98 |
| CDX78695 | Canola | cytosol | 23.08 | 5.71 |
| CDX85502 | Canola | cytosol | 23.08 | 5.56 |
| CDY64941 | Canola | cytosol | 53.85 | 4.08 |
| CDX69510 | Canola | cytosol | 50.0 | 3.88 |
| CDY26446 | Canola | cytosol | 50.0 | 3.88 |
| CDY38107 | Canola | cytosol | 23.08 | 3.85 |
| CDX70629 | Canola | peroxisome | 50.0 | 3.81 |
| CDX78646 | Canola | plasma membrane | 50.0 | 3.81 |
| CDX85541 | Canola | peroxisome | 50.0 | 3.81 |
| CDX90981 | Canola | cytosol, extracellular, peroxisome | 50.0 | 3.81 |
| CDY00647 | Canola | cytosol | 42.31 | 3.77 |
| Bra029728.1-P | Field mustard | cytosol | 50.0 | 3.44 |
| Solyc03g070390.2.1 | Tomato | cytosol, unclear | 46.15 | 3.43 |
| PGSC0003DMT400068326 | Potato | cytosol | 46.15 | 3.41 |
| PGSC0003DMT400003478 | Potato | cytosol | 46.15 | 3.38 |
| CDX91983 | Canola | cytosol | 46.15 | 3.36 |
| CDX74267 | Canola | cytosol | 46.15 | 3.36 |
| CDY34712 | Canola | cytosol | 46.15 | 3.36 |
| CDY43248 | Canola | cytosol, extracellular, peroxisome | 46.15 | 3.36 |
| CDY60468 | Canola | cytosol, extracellular, peroxisome | 46.15 | 3.36 |
| VIT_14s0083g01100.t01 | Wine grape | cytosol | 46.15 | 3.34 |
| CDY34025 | Canola | cytosol | 46.15 | 3.34 |
| CDX83155 | Canola | cytosol | 46.15 | 3.34 |
| AT3G08900.1 | Thale cress | cytosol | 46.15 | 3.31 |
| Solyc02g089170.2.1 | Tomato | cytosol, unclear | 42.31 | 3.12 |
| Solyc02g065740.2.1 | Tomato | cytosol, unclear | 42.31 | 3.06 |
| PGSC0003DMT400019802 | Potato | cytosol | 46.15 | 2.92 |
| CDY55583 | Canola | cytosol | 19.23 | 1.44 |
| CDX69446 | Canola | cytosol | 19.23 | 1.44 |
| CDY27964 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY27965 | EnsemblPlantsGene:GSBRNA2T00038886001 | ProteinID:CDY27965 | ProteinID:CDY27965.1 | UniParc:UPI0004EDB28B | UniProt:A0A078GN21 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC05g43670DBnaC05g43670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GN21]
Coordinates
chrLK032213:+:14612..14692
Molecular Weight (calculated)
2973.4 Da
IEP (calculated)
4.022
GRAVY (calculated)
-0.658
Length
26 amino acids
Sequence
(BLAST)
(BLAST)
1: MVTWIEAWEE LNAPKGTETN APRVTE
001: MAQLYSSVKP TPMLKDELDI VIPTIRNLDF LEMWRPFFEQ YHLIIVQDGD PSKVINIPVG FDYELYNRND INRILGPKAS CISFKDSACR CFGYMVSKKK
101: YIYTIDDDCF VAKDPTGKEI NALEQHIKNL LSPSTPHFFN TLYDPYRDGA DFVRGYPFSM REGAITAVSH GLWLNIPDYD APTQLVKPLE KNSRYVDAVM
201: TIPKGTLFPM CGMNLAFDRE LIGPAMYFGL MGDGQPIGRY DDMWAGWCVK VICDHMGWGV KTGLPYIWHS KASNPFVNLK KEYNGIFWQE EAIPFFQSVT
301: LPKECTSVQQ CYLELAKLVR EKLGKVDPYF ITLATGMVTW IEAWEELNSA EGTEAEAPKG KN
101: YIYTIDDDCF VAKDPTGKEI NALEQHIKNL LSPSTPHFFN TLYDPYRDGA DFVRGYPFSM REGAITAVSH GLWLNIPDYD APTQLVKPLE KNSRYVDAVM
201: TIPKGTLFPM CGMNLAFDRE LIGPAMYFGL MGDGQPIGRY DDMWAGWCVK VICDHMGWGV KTGLPYIWHS KASNPFVNLK KEYNGIFWQE EAIPFFQSVT
301: LPKECTSVQQ CYLELAKLVR EKLGKVDPYF ITLATGMVTW IEAWEELNSA EGTEAEAPKG KN
Arabidopsis Description
RGP3Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.