CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006359.1-P	Field mustard	cytosol	93.33	93.33
CDX85502	Canola	cytosol	81.9	79.63
CDY38107	Canola	cytosol	60.95	41.03
CDX73947	Canola	cytosol	45.71	27.91
CDX69446	Canola	cytosol	84.76	25.57
CDY55583	Canola	cytosol	84.76	25.57
AT5G16510.2	Thale cress	cytosol	82.86	25.0
CDY27965	Canola	cytosol	5.71	23.08
PGSC0003DMT400059506	Potato	cytosol	60.95	18.39
Solyc04g051200.1.1	Tomato	cytosol, unclear	60.0	18.1
VIT_04s0023g00110.t01	Wine grape	cytosol	55.24	16.25
CDY00647	Canola	cytosol	44.76	16.1
EES11595	Sorghum	cytosol	53.33	16.09
HORVU2Hr1G111070.2	Barley	cytosol	51.43	15.52
TraesCS2A01G498600.1	Wheat	cytosol, unclear	50.48	15.23
TraesCS2B01G526700.1	Wheat	cytosol, golgi	50.48	15.23
Os04t0660400-01	Rice	cytosol, plasma membrane, plastid	49.52	14.99
KRH00886	Soybean	cytosol, peroxisome, plastid	60.0	14.75
TraesCS2D01G498900.1	Wheat	cytosol, golgi, unclear	48.57	14.66
KRH40343	Soybean	cytosol, extracellular, plastid	58.1	14.29
CDY64941	Canola	cytosol	44.76	13.7
CDY43248	Canola	cytosol, extracellular, peroxisome	45.71	13.45
CDY60468	Canola	cytosol, extracellular, peroxisome	45.71	13.45
CDY26446	Canola	cytosol	42.86	13.43
CDX69510	Canola	cytosol	42.86	13.43
GSMUA_Achr7P00470_001	Banana	cytosol	43.81	13.37
Zm00001d001979_P002	Maize	extracellular, vacuole	53.33	13.24
CDX90981	Canola	cytosol, extracellular, peroxisome	42.86	13.2
CDX85541	Canola	peroxisome	42.86	13.2
CDX78646	Canola	plasma membrane	42.86	13.2
CDX70629	Canola	peroxisome	42.86	13.2
CDY34712	Canola	cytosol	44.76	13.17
CDX91983	Canola	cytosol	44.76	13.17
CDX74267	Canola	cytosol	44.76	13.17
CDY34025	Canola	cytosol	40.0	11.7
CDX83155	Canola	cytosol	40.0	11.7
CDY27964	Canola	cytosol	25.71	9.47

Protein Annotations

EnsemblPlants:CDX78695	EnsemblPlantsGene:GSBRNA2T00130122001	GO:A0A078CPB0	InterPro:RGP_fam	KEGG:00520+5.4.99.30	PANTHER:PTHR31682
PANTHER:PTHR31682:SF4	PFAM:PF03214	ProteinID:CDX78695	ProteinID:CDX78695.1	UniParc:UPI0004EEFE93	MapMan:3.13.7.3

Description

BnaA03g06070D

Coordinates

chrLK031815:+:1847216..1847533

Molecular Weight (calculated)

11803.1 Da

IEP (calculated)

4.867

GRAVY (calculated)

-0.303

Length

105 amino acids

Sequence
(BLAST)

001: MCLKHISDHL GYGVKTGLPY VWRNEGGDTV ESLRKKWEGV DLMEKNVPFF ESLKLPESAV KVEDCALELA KAVREQLGLD DPAFTQAADA MVSWIQRWTY
101: VNSSG

Best Arabidopsis Sequence Match ( AT5G16510.1 )
(BLAST)

001: MSLAEINKNE VDIVIGALNA DLTQFLTSWR PFFSGFHLIV VKDPELKEEL NIPEGFDVDV YSKTDMEKVV GASNSTMFSG YSCRYFGYLV SKKKYIVSID
101: DDCVPAKDPK GFLVDAVTQH VINLENPATP LFFNTLYDPY CEGADFVRGY PFSLRSGVPC AASCGLWLNL ADLDAPTQAL KTEKRNTAYV DAVMTVPAKA
201: MLPISGINIA FNRELVGPAL VPALRLAGEG KVRWETLEDV WCGMCLKHIS DHLGYGVKTG LPYVWRNERG DAVESLRKKW EGMKLMEKSV PFFDSLKLPE
301: TALKVEDCVI ELAKAVKEQL GSDDPAFTQA ADAMVKWVQL WNSVNSSA

Arabidopsis Description

RGP5Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q2T5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.