CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, cytosol

Predictor Summary:

cytosol 2
peroxisome 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, peroxisome
Any Predictor:	cytosol, extracellular, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023530.1-P	Field mustard	cytosol, extracellular, peroxisome	99.41	99.41
CDX85541	Canola	peroxisome	99.41	99.41
CDX78646	Canola	plasma membrane	98.53	98.53
CDY26446	Canola	cytosol	96.48	98.21
CDX69510	Canola	cytosol	96.19	97.91
CDX70629	Canola	peroxisome	97.07	97.07
AT5G15650.1	Thale cress	cytosol	97.07	91.94
CDY34712	Canola	cytosol	92.08	87.96
CDY60468	Canola	cytosol, extracellular, peroxisome	91.79	87.68
CDX91983	Canola	cytosol	91.5	87.39
CDY43248	Canola	cytosol, extracellular, peroxisome	91.5	87.39
CDX74267	Canola	cytosol	91.5	87.39
CDX73947	Canola	cytosol	40.76	80.81
CDY27964	Canola	cytosol	62.17	74.39
CDY64941	Canola	cytosol	73.61	73.18
CDY00647	Canola	cytosol	61.58	71.92
CDY34025	Canola	cytosol	74.49	70.75
CDX83155	Canola	cytosol	74.19	70.47
CDY27965	Canola	cytosol	3.81	50.0
CDX85502	Canola	cytosol	13.78	43.52
CDX69446	Canola	cytosol	43.99	43.1
CDX78695	Canola	cytosol	13.2	42.86
CDY55583	Canola	cytosol	43.7	42.82
CDY38107	Canola	cytosol	13.78	30.13

Protein Annotations

EnsemblPlants:CDX90981	EnsemblPlantsGene:GSBRNA2T00151737001	GO:A0A078DP06	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	InterPro:RGP_fam
KEGG:00520+5.4.99.30	PANTHER:PTHR31682	PANTHER:PTHR31682:SF15	PFAM:PF03214	ProteinID:CDX90981	ProteinID:CDX90981.1
SEG:seg	SUPFAM:SSF53448	UniParc:UPI0004EEB691	MapMan:3.13.7.3	:	:

Description

BnaC02g06160D

Coordinates

chrLK031865:-:91279..93358

Molecular Weight (calculated)

38488.6 Da

IEP (calculated)

6.252

GRAVY (calculated)

-0.174

Length

341 amino acids

Sequence
(BLAST)

001: MVDPANTVGL PVNPTPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPTKKIH VPEGYDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FLREGVTTAV SHGLWLNIPD YDAPTQLVKP KERNTRYVDA VMTIPKGTLF PMCGMNLAFD
201: RDLIGPAMYF GLMGDGQPIG RYDDMWAGWC IKVICDHLGL GVKTGLPYIY HSKASNPFVN LKKEYKGIFW QEEIIPFFQN AKLSKEATTV QQCYIELSKM
301: VKEKLSSLDP YFDKLADAMV TWIEAWDELN PPAAAAANGK A

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.