CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26446	Canola	cytosol	97.36	99.1
CDX69510	Canola	cytosol	97.07	98.81
CDX70629	Canola	peroxisome	98.53	98.53
CDX90981	Canola	cytosol, extracellular, peroxisome	98.53	98.53
CDX85541	Canola	peroxisome	97.95	97.95
Bra006315.1-P	Field mustard	cytosol	98.83	92.84
AT5G15650.1	Thale cress	cytosol	96.19	91.11
CDY60468	Canola	cytosol, extracellular, peroxisome	92.67	88.52
CDY34712	Canola	cytosol	92.67	88.52
CDY43248	Canola	cytosol, extracellular, peroxisome	92.38	88.24
CDX91983	Canola	cytosol	92.08	87.96
CDX74267	Canola	cytosol	92.08	87.96
CDX73947	Canola	cytosol	40.47	80.23
CDY27964	Canola	cytosol	62.17	74.39
CDY64941	Canola	cytosol	73.61	73.18
CDY00647	Canola	cytosol	61.58	71.92
CDY34025	Canola	cytosol	74.49	70.75
CDX83155	Canola	cytosol	74.19	70.47
CDY27965	Canola	cytosol	3.81	50.0
CDX78695	Canola	cytosol	13.2	42.86
CDX69446	Canola	cytosol	43.7	42.82
CDX85502	Canola	cytosol	13.49	42.59
CDY55583	Canola	cytosol	43.4	42.53
CDY38107	Canola	cytosol	13.49	29.49

Protein Annotations

EnsemblPlants:CDX78646	EnsemblPlantsGene:GSBRNA2T00130064001	GO:A0A078CN84	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	InterPro:RGP_fam
KEGG:00520+5.4.99.30	PANTHER:PTHR31682	PANTHER:PTHR31682:SF15	PFAM:PF03214	ProteinID:CDX78646	ProteinID:CDX78646.1
SEG:seg	SUPFAM:SSF53448	UniParc:UPI0004EE8D67	MapMan:3.13.7.3	:	:

Description

BnaA03g05580D

Coordinates

chrLK031815:+:1638483..1640488

Molecular Weight (calculated)

38498.7 Da

IEP (calculated)

6.251

GRAVY (calculated)

-0.168

Length

341 amino acids

Sequence
(BLAST)

001: MVDPANTVGI PVNPTPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPTKKIH VPEGYDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FLREGVSTAV SHGLWLNIPD YDAPTQLVKP KERNTRYVDA VMTIPKGTLF PMCGMNLAFD
201: RDLIGPAMYF GLMGDGQPIG RYDDMWAGWC IKVICDHLGL GVKTGLPYIY HSKASNPFVN LKKEYKGIFW QEDIIPFFQN VKLSKEATTV QQCYIELSKM
301: VKEKLSPLDP YFDKLADAMV TWIEAWDELN PPAAAAANGK A

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.