CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64941	Canola	cytosol	96.84	80.47
CDY00647	Canola	cytosol	76.49	74.66
Bra029728.1-P	Field mustard	cytosol	96.49	72.75
AT3G08900.1	Thale cress	cytosol	91.23	71.82
VIT_14s0083g01100.t01	Wine grape	cytosol	82.46	65.46
CDX73947	Canola	cytosol	39.3	65.12
Solyc02g089170.2.1	Tomato	cytosol, unclear	80.35	65.06
Solyc03g070390.2.1	Tomato	cytosol, unclear	79.65	64.86
PGSC0003DMT400068326	Potato	cytosol	79.65	64.49
CDY60468	Canola	cytosol, extracellular, peroxisome	80.7	64.43
CDX91983	Canola	cytosol	80.7	64.43
CDY34712	Canola	cytosol	80.7	64.43
PGSC0003DMT400003478	Potato	cytosol	80.0	64.23
CDY43248	Canola	cytosol, extracellular, peroxisome	80.35	64.15
CDX74267	Canola	cytosol	80.0	63.87
CDY26446	Canola	cytosol	74.04	62.99
CDX69510	Canola	cytosol	74.04	62.99
Solyc02g065740.2.1	Tomato	cytosol, unclear	79.3	62.95
CDX90981	Canola	cytosol, extracellular, peroxisome	74.39	62.17
CDX78646	Canola	plasma membrane	74.39	62.17
CDX70629	Canola	peroxisome	74.04	61.88
CDX85541	Canola	peroxisome	74.04	61.88
CDY34025	Canola	cytosol	71.58	56.82
CDX83155	Canola	cytosol	71.23	56.55
CDY55583	Canola	cytosol	46.67	38.22
CDX69446	Canola	cytosol	46.32	37.93
PGSC0003DMT400019802	Potato	cytosol	50.53	35.04
CDX78695	Canola	cytosol	9.47	25.71
CDY38107	Canola	cytosol	13.68	25.0
CDX85502	Canola	cytosol	9.12	24.07
CDY27965	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY27964	EnsemblPlantsGene:GSBRNA2T00038885001	GO:A0A078GS17	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016866	GO:GO:0030244
InterPro:RGP_fam	KEGG:00520+5.4.99.30	PANTHER:PTHR31682	PANTHER:PTHR31682:SF14	PFAM:PF03214	ProteinID:CDY27964
ProteinID:CDY27964.1	UniParc:UPI0004EED486	UniProt:A0A078GS17	MapMan:3.13.7.3	:	:

Description

BnaC05g43660DBnaC05g43660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GS17]

Coordinates

chrLK032213:+:13295..14561

Molecular Weight (calculated)

32309.1 Da

IEP (calculated)

5.666

GRAVY (calculated)

-0.076

Length

285 amino acids

Sequence
(BLAST)

001: MSQLYSSMKP TPVLKDELDI VVIPTILNLD FLEMNDINRI LGPKSSCISF KDSACRCFGY MVSKKKYIYT IDDDCFVAKD PSGKEINALE QHIKNLLSPS
101: TPHFFNTLYD PYSDGADFVR GYPFSMREGA ITAVSHGLWL NVPDYDAPTQ LVKPLERNSR KVYLSIQLPI LYVDAVMTIP KGTLFPMCGM NLAYDRELIG
201: PAMYFGLMGD GQPIGRYDDM WAGWCVKVIC DHMGWGVKTG LPYIWHSKAS NPFVNLRKEY NGIFWLEEAI PFFQSVTLPK ECDSV

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.