CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73947	Canola	cytosol	57.19	97.09
CDY64941	Canola	cytosol	90.75	77.26
CDY27964	Canola	cytosol	74.66	76.49
Bra001338.1-P	Field mustard	cytosol	92.47	74.18
AT3G08900.1	Thale cress	cytosol	88.01	70.99
VIT_14s0083g01100.t01	Wine grape	cytosol	81.51	66.3
PGSC0003DMT400003478	Potato	cytosol	78.77	64.79
Solyc02g089170.2.1	Tomato	cytosol, unclear	77.74	64.49
PGSC0003DMT400068326	Potato	cytosol	77.74	64.49
Solyc03g070390.2.1	Tomato	cytosol, unclear	77.05	64.29
CDX91983	Canola	cytosol	78.08	63.87
CDY60468	Canola	cytosol, extracellular, peroxisome	78.08	63.87
CDY43248	Canola	cytosol, extracellular, peroxisome	78.08	63.87
CDX74267	Canola	cytosol	77.74	63.59
CDY34712	Canola	cytosol	77.74	63.59
Solyc02g065740.2.1	Tomato	cytosol, unclear	77.4	62.95
CDX69510	Canola	cytosol	70.89	61.79
CDY26446	Canola	cytosol	70.89	61.79
CDX90981	Canola	cytosol, extracellular, peroxisome	71.92	61.58
CDX85541	Canola	peroxisome	71.92	61.58
CDX78646	Canola	plasma membrane	71.92	61.58
CDX70629	Canola	peroxisome	71.92	61.58
CDY34025	Canola	cytosol	70.89	57.66
CDX83155	Canola	cytosol	70.55	57.38
CDX78695	Canola	cytosol	16.1	44.76
CDX85502	Canola	cytosol	16.1	43.52
PGSC0003DMT400019802	Potato	cytosol	59.93	42.58
CDY27965	Canola	cytosol	3.77	42.31
CDY55583	Canola	cytosol	47.6	39.94
CDX69446	Canola	cytosol	47.26	39.66
CDY38107	Canola	cytosol	19.86	37.18

Protein Annotations

EnsemblPlants:CDY00647	EnsemblPlantsGene:GSBRNA2T00110470001	GO:A0A078EHQ3	InterPro:RGP_fam	KEGG:00520+5.4.99.30	PANTHER:PTHR31682
PANTHER:PTHR31682:SF14	PFAM:PF03214	ProteinID:CDY00647	ProteinID:CDY00647.1	UniParc:UPI0004EDD624	MapMan:3.13.7.3

Description

BnaC03g36310D

Coordinates

chrLK031921:+:1..1387

Molecular Weight (calculated)

33104.8 Da

IEP (calculated)

5.202

GRAVY (calculated)

-0.267

Length

292 amino acids

Sequence
(BLAST)

001: ACRCFGYMVS KKKYIYTIDD DCFVAKDPSG KEINALEQHI KNLLTPSTPD FFNTLYDPYG DGADFVRGYP FSMREGAITA VSHGLWLNIP DYDAPTQLVK
101: PLERNSRKFY LPLKSLNNEV VLLYVDAVMT IPKGTLFPMC GMNLAFDREL IGPAMYFGLM GDGQPIGRYD DMWAGWCVKV ICDHMGWGVK TGLPYIWHSK
201: ASNPFVNLRK EYNGIFWQEE AIPFFQSVTL PKECTSVQQC YMELAKLVKE KLGKVDPYFT KLADGMNTWI EAWDELNSPD GAEAKAPKGK DE

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.