Factsheet for Solyc02g089170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 4
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, unclear
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003478	Potato	cytosol	98.3	97.46
Solyc03g070390.2.1	Tomato	cytosol, unclear	90.62	91.14
Solyc02g065740.2.1	Tomato	cytosol, unclear	90.91	89.14
VIT_14s0083g01100.t01	Wine grape	cytosol	88.64	86.91
Solyc03g114860.2.1	Tomato	cytosol, extracellular, unclear	86.08	86.32
Solyc05g012070.2.1	Tomato	extracellular	88.35	85.91
Solyc04g005340.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	85.8	84.59
Bra001338.1-P	Field mustard	cytosol	84.66	81.87
AT3G08900.1	Thale cress	cytosol	83.81	81.49
CDY27964	Canola	cytosol	65.06	80.35
Bra029728.1-P	Field mustard	cytosol	84.09	78.31
CDY00647	Canola	cytosol	64.49	77.74
Solyc03g019750.2.1	Tomato	cytosol	76.7	77.36
CDY64941	Canola	cytosol	75.0	76.97
Solyc04g051200.1.1	Tomato	cytosol, unclear	50.0	50.57
CDY27965	Canola	cytosol	3.12	42.31

Protein Annotations

KEGG:00520+5.4.99.30	MapMan:3.13.7.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0005975	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009832	GO:GO:0009987	GO:GO:0016866
GO:GO:0030244	GO:GO:0033356	GO:GO:0052691	GO:GO:0071669	InterPro:IPR029044	UniProt:K4BC70
InterPro:Nucleotide-diphossugar_trans	PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF15	InterPro:RGP
InterPro:RGP_fam	SUPFAM:SSF53448	EnsemblPlantsGene:Solyc02g089170.2	EnsemblPlants:Solyc02g089170.2.1	UniParc:UPI0002768A7F	:

Description

No Description!

Coordinates

chr2:+:51051441..51053040

Molecular Weight (calculated)

40282.4 Da

IEP (calculated)

5.258

GRAVY (calculated)

-0.252

Length

352 amino acids

Sequence
(BLAST)

001: MATVPLKDEL DIVIPTIRNL DFLEMWRPFF EQYHLIIVQD GDPSKTIKVP DGFDYELYNR NDINKILGPR ASCISFKDSA CRCFGYMVSK KKYIYTIDDD
101: CFVAKDPSGK DINALEQHIK NLLCPSTPYF FNTLYDPFRD GADFVRGYPF SLREGVSTAV SHGLWLNIPD YDAPTQLVKP LERNTRYVDT VLTIPKGTLF
201: PMCGMNLAFD RDLIGPAMYF GLMGDGQPIG RYDDMWAGWC CKVICDHLGL GIKTGLPYIY HSKASNPFVN LKKEYNGIFW QEEIIPFFQQ MNLSKESTTV
301: QKCYVEMAKQ VNEKLGKIDP YFVKLSDAMI TWIEAWDELN PPAKETTNAA SK

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.