Subcellular Localization
min:
: max
Winner_takes_all: unclear, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| unclear:
26455813
extracellular: 29876421 |
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400063316 | Potato | cytosol | 96.58 | 92.88 |
| Solyc04g005340.2.1 | Tomato | cytosol, extracellular, nucleus, plastid, unclear | 90.31 | 88.8 |
| VIT_17s0000g05030.t01 | Wine grape | cytosol | 90.03 | 88.27 |
| Solyc03g070390.2.1 | Tomato | cytosol, unclear | 86.32 | 86.57 |
| Solyc05g012070.2.1 | Tomato | extracellular | 88.89 | 86.19 |
| Solyc02g089170.2.1 | Tomato | cytosol, unclear | 86.32 | 86.08 |
| KRH54738 | Soybean | cytosol, endoplasmic reticulum | 88.6 | 85.91 |
| Solyc02g065740.2.1 | Tomato | cytosol, unclear | 87.18 | 85.24 |
| KRH63176 | Soybean | endoplasmic reticulum | 87.46 | 84.34 |
| GSMUA_Achr8P28120_001 | Banana | cytosol | 88.89 | 83.87 |
| GSMUA_Achr4P14450_001 | Banana | cytosol | 78.35 | 83.59 |
| GSMUA_Achr3P25300_001 | Banana | cytosol | 67.52 | 82.29 |
| Solyc03g019750.2.1 | Tomato | cytosol | 81.2 | 81.66 |
| CDX73947 | Canola | cytosol | 39.89 | 81.4 |
| Solyc04g051200.1.1 | Tomato | cytosol, unclear | 49.57 | 50.0 |
| Zm00001d012683_P001 | Maize | cytosol, nucleus, peroxisome | 44.16 | 46.13 |
Protein Annotations
| KEGG:00520+5.4.99.30 | MapMan:3.13.7.3 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0005975 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009832 | GO:GO:0009987 | GO:GO:0016866 |
| GO:GO:0030244 | GO:GO:0033356 | GO:GO:0052691 | GO:GO:0071669 | InterPro:IPR029044 | UniProt:K4BKY8 |
| InterPro:Nucleotide-diphossugar_trans | PFAM:PF03214 | PIRSF:PIRSF016429 | PANTHER:PTHR31682 | PANTHER:PTHR31682:SF13 | InterPro:RGP |
| InterPro:RGP_fam | SUPFAM:SSF53448 | EnsemblPlantsGene:Solyc03g114860.2 | EnsemblPlants:Solyc03g114860.2.1 | UniParc:UPI00027685A4 | : |
Description
No Description!
Coordinates
chr3:-:64749699..64751416
Molecular Weight (calculated)
40117.5 Da
IEP (calculated)
6.054
GRAVY (calculated)
-0.216
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKASPLLKD ELDIVIPTIR NLDFLEMWRP FFEPYHLIIV QDGDPSKVIK VPEGFDYELY NRNDINKILG PKASCISFKD SACRCFGYMV SKKKYIYTID
101: DDCFVAKDPS GKEINALEQH IKNLLCPSTP FFFNTLYDPY RDGADFVRGY PFSLREGVPT AVSHGLWLNI PDYDAPTQLV KPLERNTRYV DAVMTIPKGT
201: LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GMGVKTGLPY IWHSKASNPF VNLKKEYKGI YWQEELIPFF QSVALPKDCN
301: SVQKCYLQLS KQVKAKLGKV DDYFNKLADA MITWIEAWDE LNPSTTPNGC Y
101: DDCFVAKDPS GKEINALEQH IKNLLCPSTP FFFNTLYDPY RDGADFVRGY PFSLREGVPT AVSHGLWLNI PDYDAPTQLV KPLERNTRYV DAVMTIPKGT
201: LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GMGVKTGLPY IWHSKASNPF VNLKKEYKGI YWQEELIPFF QSVALPKDCN
301: SVQKCYLQLS KQVKAKLGKV DDYFNKLADA MITWIEAWDE LNPSTTPNGC Y
001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA
Arabidopsis Description
RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.