CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
golgi 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54738	Soybean	cytosol, endoplasmic reticulum	95.33	95.86
Solyc03g114860.2.1	Tomato	cytosol, extracellular, unclear	84.34	87.46
VIT_17s0000g05030.t01	Wine grape	cytosol	85.99	87.43
GSMUA_Achr4P14450_001	Banana	cytosol	78.57	86.93
PGSC0003DMT400063316	Potato	cytosol	85.71	85.48
KRH01363	Soybean	endoplasmic reticulum, nucleus	81.59	84.14
KRH18345	Soybean	endoplasmic reticulum, nucleus	81.87	83.47
KRH45087	Soybean	endoplasmic reticulum	80.77	83.29
GSMUA_Achr8P28120_001	Banana	cytosol	84.89	83.06
KRH70960	Soybean	endoplasmic reticulum	83.79	82.88
KRG93690	Soybean	cytosol, endoplasmic reticulum	80.77	82.35
KRH75101	Soybean	endoplasmic reticulum	83.24	82.34
GSMUA_Achr3P25300_001	Banana	cytosol	64.84	81.94
CDX73947	Canola	cytosol	37.64	79.65
Zm00001d012683_P001	Maize	cytosol, nucleus, peroxisome	43.41	47.02
KRH40343	Soybean	cytosol, extracellular, plastid	46.98	40.05
KRH00886	Soybean	cytosol, peroxisome, plastid	46.43	39.58

Protein Annotations

KEGG:00520+5.4.99.30	EntrezGene:100778301	MapMan:3.13.7.3	EMBL:ACUP02002638	EnsemblPlantsGene:GLYMA_04G159700	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005829	GO:GO:0005975	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009832	GO:GO:0009987	GO:GO:0016866	GO:GO:0030244	GO:GO:0033356	GO:GO:0052691
GO:GO:0071669	UniProt:I1JWM3	InterPro:IPR029044	EnsemblPlants:KRH63176	ProteinID:KRH63176	ProteinID:KRH63176.1
InterPro:Nucleotide-diphossugar_trans	PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF13	InterPro:RGP
InterPro:RGP_fam	SUPFAM:SSF53448	UniParc:UPI000233A952	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:39586882..39589922

Molecular Weight (calculated)

41146.4 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.209

Length

364 amino acids

Sequence
(BLAST)

001: MSSSSGSTAA ATPILKEEVD IVIPTIRNLD FLGMWRPFFE GYHLIIVQDG DPSKVIKVPE GFDYELYNRN DINRVLGPRA HCISFKDSAC RCFGFLLSKK
101: KYIFTIDDDC FVAKDPSGKE INALEQHLKN LLSPSTPFFF NTLYDPYREG TDFVRGYPFS LREGVPTAAS HGLWLNIPDY DAPTQLVKPL ERNNRYVDAV
201: MTIPKGTLFP MCGMNLAFNR ELIGPAMYFG LMGEGQPIGR YDDMWAGWCV KVISDHLGLG VKTGLPYIWH SKASNPFVNL KKEYKGIYWQ EELIPFFQSV
301: SFPKECTTAQ KCYIELSKQV KAKLGKVDEY FNKLADAMVT WIEAWDELNL SGVKSEALSN GPAK

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.