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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, unclear, plastid, cytosol, nucleus

Predictor Summary:
  • cytosol 4
  • golgi 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, nucleus, plastid, unclear
Any Predictor:cytosol, golgi, mitochondrion
BaCelLo:cytosol
EpiLoc:golgi
MultiLoc:cytosol
Plant-mPloc:golgi
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400004878 Potato cytosol, extracellular 98.88 97.25
Solyc05g012070.2.1 Tomato extracellular 93.28 91.99
Solyc03g114860.2.1 Tomato cytosol, extracellular, unclear 88.8 90.31
Zm00001d033174_P001 Maize plasma membrane 90.2 88.46
Zm00001d013751_P005 Maize plastid 89.36 87.64
EES03655 Sorghum cytosol 85.99 86.97
Os03t0599800-01 Rice extracellular 88.52 86.81
Solyc03g070390.2.1 Tomato cytosol, unclear 84.87 86.57
EER91258 Sorghum cytosol 88.24 86.54
TraesCS4B01G144900.1 Wheat cytosol, extracellular, golgi, unclear 89.08 86.41
TraesCS3D01G298600.1 Wheat cytosol, unclear 85.71 86.2
HORVU3Hr1G073780.1 Barley cytosol 85.71 85.96
TraesCS3B01G333100.1 Wheat cytosol, golgi 85.71 85.96
TraesCS4A01G166900.1 Wheat cytosol 88.52 85.87
Solyc02g089170.2.1 Tomato cytosol, unclear 84.59 85.8
Solyc02g065740.2.1 Tomato cytosol, unclear 85.43 84.96
TraesCS3A01G303200.1 Wheat cytosol, extracellular, golgi 85.15 84.92
HORVU4Hr1G038960.2 Barley cytosol, plasma membrane 87.96 84.64
Solyc03g019750.2.1 Tomato cytosol 78.43 80.23
TraesCS4D01G151900.2 Wheat cytosol, golgi 88.52 77.26
VIT_05s0020g03250.t01 Wine grape cytosol 13.45 63.16
GSMUA_Achr2P13620_001 Banana cytosol 35.29 59.43
Solyc04g051200.1.1 Tomato cytosol, unclear 49.02 50.29
Protein Annotations
KEGG:00520+5.4.99.30MapMan:3.13.7.3GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005794GO:GO:0005829GO:GO:0005975GO:GO:0006139
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009832GO:GO:0009987GO:GO:0016866
GO:GO:0030244GO:GO:0033356GO:GO:0052691GO:GO:0071669InterPro:IPR029044UniProt:K4BNE0
InterPro:Nucleotide-diphossugar_transPFAM:PF03214PIRSF:PIRSF016429PANTHER:PTHR31682PANTHER:PTHR31682:SF14InterPro:RGP
InterPro:RGP_famSUPFAM:SSF53448EnsemblPlantsGene:Solyc04g005340.2EnsemblPlants:Solyc04g005340.2.1UniParc:UPI00027661C9:
Description
No Description!
Coordinates
chr4:-:248903..251735
Molecular Weight (calculated)
40571.8 Da
IEP (calculated)
5.699
GRAVY (calculated)
-0.257
Length
357 amino acids
Sequence
(BLAST)
001: MAGASVTPTP LLKDELDIVI PTIRNLDFLE MWRPFFQPYH LIIVQDGDPS KTINVPEGFD YELYNRDDIN RILGPKASCI SFKDSACRCF GYMVSKKKYI
101: YTIDDDCFVA KDPSGKDINA LEQHIKNLLC PSTPHFFNTL YDPYREGADF VRGYPFSMRE GAATAVSHGL WLNIPDYDAP TQLVKPRERN TRYVDAVMTI
201: PKGTLFPMCG MNLAFDRELI GPAMYFGLMG DGQPIGRYDD MWAGWCIKVI CDHLGLGVKT GLPYIWHSKA SNPFVNLKKE YKGIYWQEEI IPFFQSATLP
301: KDCTSVQQCY LELSKQVKEK LSAIDPYFTK LADAMVTWIE AWDELNPKPS ISNGPGK
Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)
001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA
Arabidopsis Description
RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.