Subcellular Localization
min:
: max
Winner_takes_all: extracellular, unclear, plastid, cytosol, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 4
- golgi 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
26371478
unclear: 26455813 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400004878 | Potato | cytosol, extracellular | 98.88 | 97.25 |
Solyc05g012070.2.1 | Tomato | extracellular | 93.28 | 91.99 |
Solyc03g114860.2.1 | Tomato | cytosol, extracellular, unclear | 88.8 | 90.31 |
Zm00001d033174_P001 | Maize | plasma membrane | 90.2 | 88.46 |
Zm00001d013751_P005 | Maize | plastid | 89.36 | 87.64 |
EES03655 | Sorghum | cytosol | 85.99 | 86.97 |
Os03t0599800-01 | Rice | extracellular | 88.52 | 86.81 |
Solyc03g070390.2.1 | Tomato | cytosol, unclear | 84.87 | 86.57 |
EER91258 | Sorghum | cytosol | 88.24 | 86.54 |
TraesCS4B01G144900.1 | Wheat | cytosol, extracellular, golgi, unclear | 89.08 | 86.41 |
TraesCS3D01G298600.1 | Wheat | cytosol, unclear | 85.71 | 86.2 |
HORVU3Hr1G073780.1 | Barley | cytosol | 85.71 | 85.96 |
TraesCS3B01G333100.1 | Wheat | cytosol, golgi | 85.71 | 85.96 |
TraesCS4A01G166900.1 | Wheat | cytosol | 88.52 | 85.87 |
Solyc02g089170.2.1 | Tomato | cytosol, unclear | 84.59 | 85.8 |
Solyc02g065740.2.1 | Tomato | cytosol, unclear | 85.43 | 84.96 |
TraesCS3A01G303200.1 | Wheat | cytosol, extracellular, golgi | 85.15 | 84.92 |
HORVU4Hr1G038960.2 | Barley | cytosol, plasma membrane | 87.96 | 84.64 |
Solyc03g019750.2.1 | Tomato | cytosol | 78.43 | 80.23 |
TraesCS4D01G151900.2 | Wheat | cytosol, golgi | 88.52 | 77.26 |
VIT_05s0020g03250.t01 | Wine grape | cytosol | 13.45 | 63.16 |
GSMUA_Achr2P13620_001 | Banana | cytosol | 35.29 | 59.43 |
Solyc04g051200.1.1 | Tomato | cytosol, unclear | 49.02 | 50.29 |
Protein Annotations
KEGG:00520+5.4.99.30 | MapMan:3.13.7.3 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0005975 | GO:GO:0006139 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009832 | GO:GO:0009987 | GO:GO:0016866 |
GO:GO:0030244 | GO:GO:0033356 | GO:GO:0052691 | GO:GO:0071669 | InterPro:IPR029044 | UniProt:K4BNE0 |
InterPro:Nucleotide-diphossugar_trans | PFAM:PF03214 | PIRSF:PIRSF016429 | PANTHER:PTHR31682 | PANTHER:PTHR31682:SF14 | InterPro:RGP |
InterPro:RGP_fam | SUPFAM:SSF53448 | EnsemblPlantsGene:Solyc04g005340.2 | EnsemblPlants:Solyc04g005340.2.1 | UniParc:UPI00027661C9 | : |
Description
No Description!
Coordinates
chr4:-:248903..251735
Molecular Weight (calculated)
40571.8 Da
IEP (calculated)
5.699
GRAVY (calculated)
-0.257
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGASVTPTP LLKDELDIVI PTIRNLDFLE MWRPFFQPYH LIIVQDGDPS KTINVPEGFD YELYNRDDIN RILGPKASCI SFKDSACRCF GYMVSKKKYI
101: YTIDDDCFVA KDPSGKDINA LEQHIKNLLC PSTPHFFNTL YDPYREGADF VRGYPFSMRE GAATAVSHGL WLNIPDYDAP TQLVKPRERN TRYVDAVMTI
201: PKGTLFPMCG MNLAFDRELI GPAMYFGLMG DGQPIGRYDD MWAGWCIKVI CDHLGLGVKT GLPYIWHSKA SNPFVNLKKE YKGIYWQEEI IPFFQSATLP
301: KDCTSVQQCY LELSKQVKEK LSAIDPYFTK LADAMVTWIE AWDELNPKPS ISNGPGK
101: YTIDDDCFVA KDPSGKDINA LEQHIKNLLC PSTPHFFNTL YDPYREGADF VRGYPFSMRE GAATAVSHGL WLNIPDYDAP TQLVKPRERN TRYVDAVMTI
201: PKGTLFPMCG MNLAFDRELI GPAMYFGLMG DGQPIGRYDD MWAGWCIKVI CDHLGLGVKT GLPYIWHSKA SNPFVNLKKE YKGIYWQEEI IPFFQSATLP
301: KDCTSVQQCY LELSKQVKEK LSAIDPYFTK LADAMVTWIE AWDELNPKPS ISNGPGK
001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA
Arabidopsis Description
RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.