Factsheet for TraesCS3B01G333100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G298600.1	Wheat	cytosol, unclear	99.44	99.72
HORVU3Hr1G073780.1	Barley	cytosol	99.44	99.44
TraesCS3A01G303200.1	Wheat	cytosol, extracellular, golgi	98.6	98.04
EES03655	Sorghum	cytosol	90.45	91.22
TraesCS4B01G144900.1	Wheat	cytosol, extracellular, golgi, unclear	88.76	85.87
Solyc04g005340.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	85.96	85.71
Solyc05g012070.2.1	Tomato	extracellular	86.52	85.08
PGSC0003DMT400004878	Potato	cytosol, extracellular	85.96	84.3
PGSC0003DMT400072896	Potato	cytosol, mitochondrion	85.67	84.25
TraesCS2B01G200900.1	Wheat	cytosol	84.27	83.33
VIT_05s0020g03250.t01	Wine grape	cytosol	13.2	61.84
GSMUA_Achr2P13620_001	Banana	cytosol	32.3	54.25
TraesCS5B01G104000.1	Wheat	cytosol	17.13	53.51
TraesCS2B01G526700.1	Wheat	cytosol, golgi	44.1	45.11

Protein Annotations

EnsemblPlants:TraesCS3B01G333100.1	EnsemblPlantsGene:TraesCS3B01G333100	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0009987
GO:GO:0016866	GO:GO:0071669	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	InterPro:RGP	InterPro:RGP_fam
KEGG:00520+5.4.99.30	PANTHER:PTHR31682	PANTHER:PTHR31682:SF8	PFAM:PF03214	PIRSF:PIRSF016429	SUPFAM:SSF53448
MapMan:3.13.7.3	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:539560214..539561503

Molecular Weight (calculated)

40563.1 Da

IEP (calculated)

6.361

GRAVY (calculated)

-0.212

Length

356 amino acids

Sequence
(BLAST)

001: MAPLLKDELD IVIPTIRNLD FLEMWRPFFQ PYHLIIVQDG DPTRTVMVPE GFDYELYNRN DINRILGPKA SCISFKDSAC RCFGYMVSKK KYVYTIDDDC
101: FVAKDPTGKD IDALAKHIQN LLCPSTPLFF NTLYDPYQEG ADFVRGYPFS LREGVPTAVS HGLWLNIPDY DAPTQLVKPR ERNGRYVDAV MTIPKGSLFP
201: MCGMNLAFDR ELIGPAMYFG LMGDGQPIGR YDDMWAGWCV KVICDHLGLG VKTGLPYIWH SKASNPFVNL KKEYKGIFWQ EDIIPFFQAA KLTKECDTVQ
301: KCYISLSQQV KEKLGKIDPY FVKLADAMVT WIEAWDMLNS KDSKEADVAN GKLKGK

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.