Factsheet for TraesCS4B01G144900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 19786127
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G166900.1	Wheat	cytosol	98.64	98.64
HORVU4Hr1G038960.2	Barley	cytosol, plasma membrane	97.83	97.03
Os03t0599800-01	Rice	extracellular	92.93	93.96
Zm00001d033174_P001	Maize	plasma membrane	92.12	93.13
Zm00001d013751_P005	Maize	plastid	92.12	93.13
EER91258	Sorghum	cytosol	91.03	92.03
TraesCS4D01G151900.2	Wheat	cytosol, golgi	99.18	89.24
Solyc04g005340.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	86.41	89.08
TraesCS3B01G333100.1	Wheat	cytosol, golgi	85.87	88.76
TraesCS2B01G200900.1	Wheat	cytosol	86.41	88.33
PGSC0003DMT400004878	Potato	cytosol, extracellular	86.96	88.15
Solyc05g012070.2.1	Tomato	extracellular	86.68	88.12
PGSC0003DMT400072896	Potato	cytosol, mitochondrion	85.87	87.29
VIT_05s0020g03250.t01	Wine grape	cytosol	13.32	64.47
GSMUA_Achr2P13620_001	Banana	cytosol	35.05	60.85
TraesCS5B01G104000.1	Wheat	cytosol	15.22	49.12
TraesCS2B01G526700.1	Wheat	cytosol, golgi	41.85	44.25

Protein Annotations

EnsemblPlants:TraesCS4B01G144900.1	EnsemblPlantsGene:TraesCS4B01G144900	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0009987
GO:GO:0016866	GO:GO:0071669	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	InterPro:RGP	InterPro:RGP_fam
KEGG:00520+5.4.99.30	PANTHER:PTHR31682	PANTHER:PTHR31682:SF13	PFAM:PF03214	PIRSF:PIRSF016429	SUPFAM:SSF53448
MapMan:3.13.7.3	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:199190180..199192244

Molecular Weight (calculated)

41511.0 Da

IEP (calculated)

6.059

GRAVY (calculated)

-0.182

Length

368 amino acids

Sequence
(BLAST)

001: MAGTVTVPGS SVPSTPLLKD ELDIVIPTIR NLDFLEMWRP FFQPYHLIIV QDGDPSKVIK VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYVFTID DDCFVAKDPS GKDINALEQH IKNLLSPSTP FFFNTLYDPY REGADFVRGY PFSLREGAPT AVSHGLWLNI PDYDAPTQMV KPRERNTRYV
201: DAVLTIPKGT LFPMCGMNLA FDRQLIGPAM YFGLMGDGQP IGRYDDMWAG WCVKVICDHL SLGVKTGLPY LWHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QNATLPKECD TVQKCYISLS EQVKEKLGKI DPYFVKLADA MVTWIEAWDE LNPSDAVVAS GNGKAAAK

Best Arabidopsis Sequence Match ( AT5G15650.1 )
(BLAST)

001: MVEPANTVGL PVNPTPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKKIH VPEGYDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSSP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRDLIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL SLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEEIIPFF
301: QNAKLSKEAV TVQQCYIELS KMVKEKLSSL DPYFDKLADA MVTWIEAWDE LNPPAASGKA

Arabidopsis Description

RGP2RGP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UG61]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.