Factsheet for HORVU4Hr1G038960.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 4
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G166900.1	Wheat	cytosol	97.3	98.1
TraesCS4B01G144900.1	Wheat	cytosol, extracellular, golgi, unclear	97.03	97.83
Os03t0599800-01	Rice	extracellular	92.18	93.96
Zm00001d013751_P005	Maize	plastid	90.84	92.58
Zm00001d033174_P001	Maize	plasma membrane	90.57	92.31
EER91258	Sorghum	cytosol	89.22	90.93
TraesCS4D01G151900.2	Wheat	cytosol, golgi	97.84	88.75
HORVU3Hr1G073780.1	Barley	cytosol	84.64	88.2
Solyc04g005340.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	84.64	87.96
PGSC0003DMT400004878	Potato	cytosol, extracellular	85.18	87.05
Solyc05g012070.2.1	Tomato	extracellular	84.91	87.02
PGSC0003DMT400072896	Potato	cytosol, mitochondrion	84.1	86.19
HORVU2Hr1G033100.1	Barley	cytosol, golgi, mitochondrion	84.64	81.98
VIT_05s0020g03250.t01	Wine grape	cytosol	12.94	63.16
GSMUA_Achr2P13620_001	Banana	cytosol	34.5	60.38
HORVU2Hr1G111070.2	Barley	cytosol	42.32	45.11

Protein Annotations

EnsemblPlants:HORVU4Hr1G038960.2	EnsemblPlantsGene:HORVU4Hr1G038960	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0009987
GO:GO:0016866	GO:GO:0071669	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	InterPro:RGP	InterPro:RGP_fam
KEGG:00520+5.4.99.30	PANTHER:PTHR31682	PANTHER:PTHR31682:SF13	PFAM:PF03214	PIRSF:PIRSF016429	SEG:seg
SUPFAM:SSF53448	UniParc:UPI0002958CD4	UniProt:M0XJL4	MapMan:3.13.7.3	:	:

Description

No Description!

Coordinates

chrchr4H:+:297691123..297693678

Molecular Weight (calculated)

41712.1 Da

IEP (calculated)

6.058

GRAVY (calculated)

-0.189

Length

371 amino acids

Sequence
(BLAST)

001: MAGTVTVPGS SVPSTPLLKD ELDIVIPTIR NLDFLEMWRP FFQPYHLIIV QDGDPSKAIK VPEGFDYDLY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYVFTID DDCFVAKDPS GKDINALEQH IKNLLSPSTP FFFNTLYDPY REGADFVRGY PFSLREGAPT AVSHGLWLNI PDYDAPTQMV KPRERNSRYV
201: DAVLTIPKGT LFPMCGMNLA FDRQLIGPAM YFGLMGDGQP IGRYDDMWAG WCVKVICDHL SLGVKTGLPY LWHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QNATLSKECD TVQKCYISLS EQVREKLGKI DPYFLKLADA MVTWIEAWDE LNPSATPDAV AAAGNGKAAA K

Best Arabidopsis Sequence Match ( AT5G15650.1 )
(BLAST)

001: MVEPANTVGL PVNPTPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKKIH VPEGYDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSSP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRDLIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL SLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEEIIPFF
301: QNAKLSKEAV TVQQCYIELS KMVKEKLSSL DPYFDKLADA MVTWIEAWDE LNPPAASGKA

Arabidopsis Description

RGP2RGP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UG61]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.