Factsheet for PGSC0003DMT400004878

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117
extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005340.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	97.25	98.88
PGSC0003DMT400072896	Potato	cytosol, mitochondrion	92.29	92.54
Zm00001d033174_P001	Maize	plasma membrane	88.98	88.74
PGSC0003DMT400063316	Potato	cytosol	88.43	87.95
Zm00001d013751_P005	Maize	plastid	88.15	87.91
EER91258	Sorghum	cytosol	87.33	87.09
EES03655	Sorghum	cytosol	84.57	86.97
TraesCS4B01G144900.1	Wheat	cytosol, extracellular, golgi, unclear	88.15	86.96
PGSC0003DMT400068326	Potato	cytosol	84.3	86.93
Os03t0599800-01	Rice	extracellular	87.05	86.81
TraesCS3D01G298600.1	Wheat	cytosol, unclear	84.3	86.2
TraesCS4A01G166900.1	Wheat	cytosol	87.33	86.14
TraesCS3B01G333100.1	Wheat	cytosol, golgi	84.3	85.96
HORVU3Hr1G073780.1	Barley	cytosol	84.3	85.96
PGSC0003DMT400003478	Potato	cytosol	83.47	85.35
HORVU4Hr1G038960.2	Barley	cytosol, plasma membrane	87.05	85.18
TraesCS3A01G303200.1	Wheat	cytosol, extracellular, golgi	83.75	84.92
PGSC0003DMT400039494	Potato	cytosol	76.86	79.94
TraesCS4D01G151900.2	Wheat	cytosol, golgi	87.6	77.75
VIT_05s0020g03250.t01	Wine grape	cytosol	13.5	64.47
GSMUA_Achr2P13620_001	Banana	cytosol	34.99	59.91
PGSC0003DMT400059506	Potato	cytosol	47.66	49.71
PGSC0003DMT400019802	Potato	cytosol	50.69	44.77

Protein Annotations

KEGG:00520+5.4.99.30	EntrezGene:102601908	MapMan:3.13.7.3	ProteinID:ABA81861	ProteinID:ABA81861.1	EMBL:AJ310910
ProteinID:CAC84517	ProteinID:CAC84517.1	EMBL:DQ207853	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009506	GO:GO:0009987	GO:GO:0016043	GO:GO:0016853	GO:GO:0016866	GO:GO:0019538
GO:GO:0030054	GO:GO:0030244	GO:GO:0030312	GO:GO:0052691	GO:GO:0071555	GO:GO:0071669
InterPro:IPR029044	RefSeq:NP_001275274.1	InterPro:Nucleotide-diphossugar_trans	PFAM:PF03214	EnsemblPlantsGene:PGSC0003DMG400001939	PGSC:PGSC0003DMG400001939
EnsemblPlants:PGSC0003DMT400004878	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF14	UniProt:Q38M71	InterPro:RGP
InterPro:RGP_fam	SUPFAM:SSF53448	UniParc:UPI00005CA261	:	:	:

Description

UDP-glucose:protein transglucosylase [Source:PGSC_GENE;Acc:PGSC0003DMG400001939]

Coordinates

chr00:-:12637436..12639940

Molecular Weight (calculated)

41157.5 Da

IEP (calculated)

5.702

GRAVY (calculated)

-0.251

Length

363 amino acids

Sequence
(BLAST)

001: MAGSSVTPTP LLKDELDIVI PTIRNLDFLE MWRPFFQPYH LIIVQDGDPS KIINVPEGFD YELYNRNDIN RILGPKASCI SFKDSACRCF GYMVSKKKYI
101: YTIDDDCFVA KDPSGKDINA LEQHIKNLLC PSTPHFFNTL YDPYREGADF VRGYPFSMRE GAATAVSHGL WLNIPDYDAP TQLVKPRERN TRYVDAVMTI
201: PKGTLFPMCG MNLAFDRELI GPAMYFGLMG DGQPIGRYDD MWAGWCIKVI CDHLGLGVKT GLPYIWHSKA SNPFVNLKKE YKGIYWQEEI IPFFQSATLP
301: KDCTSVQQCY LELSKQVKEK LSTIDPYFTK LADAMVTWIE AWDELNPTGE GLAKPSISNG PGK

Best Arabidopsis Sequence Match ( AT5G15650.1 )
(BLAST)

001: MVEPANTVGL PVNPTPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKKIH VPEGYDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSSP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRDLIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL SLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEEIIPFF
301: QNAKLSKEAV TVQQCYIELS KMVKEKLSSL DPYFDKLADA MVTWIEAWDE LNPPAASGKA

Arabidopsis Description

RGP2RGP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UG61]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.