Factsheet for TraesCS3A01G303200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 19786127
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G333100.1	Wheat	cytosol, golgi	98.04	98.6
TraesCS3D01G298600.1	Wheat	cytosol, unclear	97.77	98.59
HORVU3Hr1G073780.1	Barley	cytosol	97.77	98.31
EES03655	Sorghum	cytosol	89.39	90.65
Solyc04g005340.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	84.92	85.15
Solyc05g012070.2.1	Tomato	extracellular	85.47	84.53
TraesCS4A01G166900.1	Wheat	cytosol	86.87	84.51
PGSC0003DMT400004878	Potato	cytosol, extracellular	84.92	83.75
PGSC0003DMT400072896	Potato	cytosol, mitochondrion	84.64	83.7
TraesCS2A01G174400.1	Wheat	golgi	83.24	69.46
VIT_05s0020g03250.t01	Wine grape	cytosol	13.13	61.84
TraesCS3A01G149600.1	Wheat	cytosol	20.39	60.83
TraesCS1A01G271600.1	Wheat	cytosol	23.74	56.67
GSMUA_Achr2P13620_001	Banana	cytosol	31.56	53.3
TraesCS6A01G151900.1	Wheat	mitochondrion	16.48	50.86
TraesCS5A01G083800.1	Wheat	mitochondrion	16.2	50.0
TraesCS6A01G201200.1	Wheat	cytosol	16.2	50.0
TraesCS6A01G183500.1	Wheat	mitochondrion	15.92	49.57
TraesCS5A01G122800.1	Wheat	mitochondrion	15.92	49.14
TraesCS2A01G498600.1	Wheat	cytosol, unclear	44.41	45.69

Protein Annotations

EnsemblPlants:TraesCS3A01G303200.1	EnsemblPlantsGene:TraesCS3A01G303200	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0009987
GO:GO:0016866	GO:GO:0071669	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	InterPro:RGP	InterPro:RGP_fam
KEGG:00520+5.4.99.30	PANTHER:PTHR31682	PANTHER:PTHR31682:SF8	PFAM:PF03214	PIRSF:PIRSF016429	SUPFAM:SSF53448
MapMan:3.13.7.3	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:537507634..537508903

Molecular Weight (calculated)

40839.3 Da

IEP (calculated)

6.065

GRAVY (calculated)

-0.260

Length

358 amino acids

Sequence
(BLAST)

001: MAPLLKDELD IVIPTIRNLE FLEMWRPFFE PYHLIIVQDG DPTRTVMVPE GFDYELYNRN DINRILGPKA SCISFKDSAC RCFGYMVSKK KYVYTIDDDC
101: FVAKDPTGKD IDALAKHIQN LLCPSTPLFF NTLYDPYQEG ADFVRGYPFS LREGVPTAVS HGLWLNIPDY DAPTQLVKPR ERNGRYVDAV MTIPKGSLFP
201: MCGMNLAFDR ELIGPAMYFG LMGDGQPIGR YDDMWAGWCV KVICDHLGLG VKTGLPYIWH SKASNPFVNL KKEYKGIFWQ EDIIPFFQAA KLTKECDTVQ
301: KCYISLSQQV REKLGKIDPY FTKLADAMVT WIEAWDMLNS KDSKDSKEAD ANGKLKGK

Best Arabidopsis Sequence Match ( AT5G16510.1 )
(BLAST)

001: MSLAEINKNE VDIVIGALNA DLTQFLTSWR PFFSGFHLIV VKDPELKEEL NIPEGFDVDV YSKTDMEKVV GASNSTMFSG YSCRYFGYLV SKKKYIVSID
101: DDCVPAKDPK GFLVDAVTQH VINLENPATP LFFNTLYDPY CEGADFVRGY PFSLRSGVPC AASCGLWLNL ADLDAPTQAL KTEKRNTAYV DAVMTVPAKA
201: MLPISGINIA FNRELVGPAL VPALRLAGEG KVRWETLEDV WCGMCLKHIS DHLGYGVKTG LPYVWRNERG DAVESLRKKW EGMKLMEKSV PFFDSLKLPE
301: TALKVEDCVI ELAKAVKEQL GSDDPAFTQA ADAMVKWVQL WNSVNSSA

Arabidopsis Description

RGP5Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q2T5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.