CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000628.1-P	Field mustard	cytosol	99.44	99.44
CDX83155	Canola	cytosol	98.89	98.89
AT5G50750.1	Thale cress	cytosol	95.54	94.23
CDX91983	Canola	cytosol	74.93	75.35
CDX69510	Canola	cytosol	69.92	74.93
CDY26446	Canola	cytosol	69.92	74.93
CDY43248	Canola	cytosol, extracellular, peroxisome	74.37	74.79
CDY34712	Canola	cytosol	74.37	74.79
CDX74267	Canola	cytosol	74.37	74.79
CDY60468	Canola	cytosol, extracellular, peroxisome	74.09	74.51
CDX90981	Canola	cytosol, extracellular, peroxisome	70.75	74.49
CDX78646	Canola	plasma membrane	70.75	74.49
VIT_17s0000g01290.t01	Wine grape	cytosol	76.6	74.32
CDX85541	Canola	peroxisome	70.47	74.19
CDX70629	Canola	peroxisome	70.19	73.9
CDY27964	Canola	cytosol	56.82	71.58
CDX73947	Canola	cytosol	34.26	71.51
CDY00647	Canola	cytosol	57.66	70.89
CDY64941	Canola	cytosol	66.57	69.68
CDX69446	Canola	cytosol	45.13	46.55
CDY55583	Canola	cytosol	44.85	46.26
CDY27965	Canola	cytosol	3.34	46.15
CDX85502	Canola	cytosol	12.53	41.67
CDX78695	Canola	cytosol	11.7	40.0
CDY38107	Canola	cytosol	15.6	35.9

Protein Annotations

KEGG:00520+5.4.99.30	MapMan:3.13.7.3	GO:A0A078H653	UniProt:A0A078H653	EnsemblPlants:CDY34025	ProteinID:CDY34025
ProteinID:CDY34025.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016866	GO:GO:0030244	GO:GO:0071669	EnsemblPlantsGene:GSBRNA2T00055892001
InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF15
InterPro:RGP	InterPro:RGP_fam	SUPFAM:SSF53448	UniParc:UPI0004EACF6A	:	:

Description

BnaC03g27900DBnaC03g27900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H653]

Coordinates

chrLK032326:-:250631..252221

Molecular Weight (calculated)

41132.2 Da

IEP (calculated)

5.641

GRAVY (calculated)

-0.349

Length

359 amino acids

Sequence
(BLAST)

001: MAGYNLEAIE AAPLKEDVDI VIPTIRSLDF LEQWRPFLKH YHLIIVQDGD PSINIRVPEG YDYELYNRND INRILGPRAN CISYKDGGCR CFGFMVSKKK
101: YIYTIDDDCF VANDPSGKEI NVIAQHIKNL ETPSTPHYFN TLYDPFRDGT DFVRGYPFSL REGVTTAISH GLWLNIPDYD APTQLVKPRE RNIRYVDAVM
201: TIPKGVLYPM CGMNLAFNRE LIGPAMYFGL MGEGQPISRY DDMWAGWAAK VVCDHLGFGV KTGLPYVWHS KASNPFVNLK KEHKGLHWQE DMVPFFQNLR
301: LSKESDTAAK CYMELSNMTK EKLTEVDPYF EKLADAMVAW IEAWEELNPP VDGKDVKAR

Best Arabidopsis Sequence Match ( AT5G50750.1 )
(BLAST)

001: MAGYNLEAIE AAPLKDDLDI VIPTIRSLDF LEQWRPFLHH YHLIIVQDGD PSIKIRVPEG YDYELYNRND INRILGPRAN CISYKDGGCR CFGFMVSKKK
101: YIYTIDDDCF VAKDPSGKDI NVIAQHIKNL ETPSTPHYFN TLYDPFRDGT DFVRGYPFSL REGVQTAISH GLWLNIPDYD APTQLVKPRE RNTRYVDAVM
201: TIPKRVLYPM CGMNLAFNRE LVGPAMYFGL MGEGQPISRY DDMWAGWAAK VVCDHLGFGV KTGLPYLWHS KASNPFVNLK KEHKGLHWQE DMVPFFQNLR
301: LSKESDTAAK CYMEISNMTK EKLTKVDPYF EKLADAMVVW IEAWEELNPP VKKKQSDGKD VKAK

Arabidopsis Description

RGP4Probable UDP-arabinopyranose mutase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUE6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.