Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000628.1-P | Field mustard | cytosol | 94.78 | 96.1 |
| CDX83155 | Canola | cytosol | 94.23 | 95.54 |
| CDY34025 | Canola | cytosol | 94.23 | 95.54 |
| AT3G02230.1 | Thale cress | cytosol | 74.45 | 75.91 |
| AT5G15650.1 | Thale cress | cytosol | 74.73 | 75.56 |
| VIT_17s0000g01290.t01 | Wine grape | cytosol | 75.82 | 74.59 |
| AT3G08900.1 | Thale cress | cytosol | 71.98 | 72.38 |
| AT5G16510.2 | Thale cress | cytosol | 44.23 | 46.26 |
Protein Annotations
| KEGG:00520+5.4.99.30 | MapMan:3.13.7.3 | EntrezGene:835147 | UniProt:A0A178UG38 | ProteinID:AED95988.1 | EMBL:AF329280 |
| ArrayExpress:AT5G50750 | EnsemblPlantsGene:AT5G50750 | RefSeq:AT5G50750 | TAIR:AT5G50750 | RefSeq:AT5G50750-TAIR-G | EnsemblPlants:AT5G50750.1 |
| TAIR:AT5G50750.1 | Unigene:At.7901 | ProteinID:BAA96988.1 | EMBL:BT004025 | EMBL:BT005194 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0005975 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009832 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016740 |
| GO:GO:0016853 | GO:GO:0016866 | GO:GO:0030244 | GO:GO:0033356 | GO:GO:0071555 | GO:GO:0071669 |
| InterPro:IPR029044 | EMBL:KJ138643 | RefSeq:NP_199888.1 | InterPro:Nucleotide-diphossugar_trans | ProteinID:OAO92778.1 | PFAM:PF03214 |
| PIRSF:PIRSF016429 | PO:PO:0000293 | PO:PO:0001170 | PO:PO:0006048 | PANTHER:PTHR31682 | PANTHER:PTHR31682:SF15 |
| UniProt:Q9LUE6 | InterPro:RGP | Symbol:RGP4 | InterPro:RGP_fam | SUPFAM:SSF53448 | UniParc:UPI000000C23E |
| UniProt:W8QN51 | : | : | : | : | : |
Description
RGP4Probable UDP-arabinopyranose mutase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUE6]
Coordinates
chr5:+:20640992..20642787
Molecular Weight (calculated)
41868.3 Da
IEP (calculated)
7.040
GRAVY (calculated)
-0.416
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGYNLEAIE AAPLKDDLDI VIPTIRSLDF LEQWRPFLHH YHLIIVQDGD PSIKIRVPEG YDYELYNRND INRILGPRAN CISYKDGGCR CFGFMVSKKK
101: YIYTIDDDCF VAKDPSGKDI NVIAQHIKNL ETPSTPHYFN TLYDPFRDGT DFVRGYPFSL REGVQTAISH GLWLNIPDYD APTQLVKPRE RNTRYVDAVM
201: TIPKRVLYPM CGMNLAFNRE LVGPAMYFGL MGEGQPISRY DDMWAGWAAK VVCDHLGFGV KTGLPYLWHS KASNPFVNLK KEHKGLHWQE DMVPFFQNLR
301: LSKESDTAAK CYMEISNMTK EKLTKVDPYF EKLADAMVVW IEAWEELNPP VKKKQSDGKD VKAK
101: YIYTIDDDCF VAKDPSGKDI NVIAQHIKNL ETPSTPHYFN TLYDPFRDGT DFVRGYPFSL REGVQTAISH GLWLNIPDYD APTQLVKPRE RNTRYVDAVM
201: TIPKRVLYPM CGMNLAFNRE LVGPAMYFGL MGEGQPISRY DDMWAGWAAK VVCDHLGFGV KTGLPYLWHS KASNPFVNLK KEHKGLHWQE DMVPFFQNLR
301: LSKESDTAAK CYMEISNMTK EKLTKVDPYF EKLADAMVVW IEAWEELNPP VKKKQSDGKD VKAK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.