Factsheet for VIT_17s0000g01290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
golgi 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g05030.t01	Wine grape	cytosol	83.78	86.59
VIT_14s0083g01100.t01	Wine grape	cytosol	82.7	85.24
VIT_01s0011g00160.t01	Wine grape	cytosol	81.89	83.93
Bra000628.1-P	Field mustard	cytosol	74.59	76.88
CDY34025	Canola	cytosol	74.32	76.6
CDX83155	Canola	cytosol	74.05	76.32
AT5G50750.1	Thale cress	cytosol	74.59	75.82
VIT_05s0020g03250.t01	Wine grape	cytosol	14.86	72.37
VIT_13s0106g00180.t01	Wine grape	cytosol	12.97	59.26
VIT_04s0023g00110.t01	Wine grape	cytosol	46.22	47.9

Protein Annotations

KEGG:00520+5.4.99.30	EntrezGene:100250902	wikigene:100250902	MapMan:3.13.7.3	ProteinID:CCB43330	ProteinID:CCB43330.1
UniProt:F6GSW1	EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0005975	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009832	GO:GO:0009987	GO:GO:0016866
GO:GO:0030244	GO:GO:0033356	GO:GO:0052691	GO:GO:0071669	InterPro:IPR029044	EntrezGene:LOC100250902
wikigene:LOC100250902	InterPro:Nucleotide-diphossugar_trans	PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF6
InterPro:RGP	InterPro:RGP_fam	SUPFAM:SSF53448	UniParc:UPI00015C9F2D	ArrayExpress:VIT_17s0000g01290	EnsemblPlantsGene:VIT_17s0000g01290
EnsemblPlants:VIT_17s0000g01290.t01	unigene:Vvi.21250	RefSeq:XP_002283867	RefSeq:XP_002283867.1	:	:

Description

No Description!

Coordinates

chr17:-:928709..931440

Molecular Weight (calculated)

41982.7 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.223

Length

370 amino acids

Sequence
(BLAST)

001: MAQPAIPVTP ALKDDLDIVI PTIRNLDFLE MWRPFFQPYH LIIVQDGDPT KTIRVPEGFD YELYNRNDVN RILGPKASCI SFKDSACRCF GFLVSKKKYI
101: FTIDDDCFVA KDPSGKEINA LAQHIQNLLT PSTPFFFNTL YDPFREGADF VRGYPFSLRE GAPTAISHGL WLNIPDYDAP TQLVKPLERN TRYVDAVMTI
201: PKGTLFPMCG MNLGFDRELI GPAMYFGLMG DGQPIGRYDD MWAGWCAKVI CDHMSLGVKT GLPYIWHSKA SNPFVNLKKE YKGIYWQEDI IPFFQSVVFP
301: KECITVQQCY IELSKQVKEK LGHVDPYFQK LADSMVTWIE AWEELNPPTK AAPAAQPNGV KKDAPAPKPK

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.