Factsheet for VIT_01s0011g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
golgi 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g05030.t01	Wine grape	cytosol	88.92	89.66
VIT_14s0083g01100.t01	Wine grape	cytosol	87.26	87.74
VIT_17s0000g01290.t01	Wine grape	cytosol	83.93	81.89
CDX73947	Canola	cytosol	38.5	80.81
VIT_13s0106g00180.t01	Wine grape	cytosol	15.51	69.14
VIT_05s0020g03250.t01	Wine grape	cytosol	13.85	65.79
VIT_04s0023g00110.t01	Wine grape	cytosol	49.58	50.14

Protein Annotations

KEGG:00520+5.4.99.30	EntrezGene:100256140	wikigene:100256140	MapMan:3.13.7.3	ProteinID:CCB51090	ProteinID:CCB51090.1
UniProt:F6HEZ8	EMBL:FN595752	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0005975	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009832	GO:GO:0009987	GO:GO:0016866
GO:GO:0030244	GO:GO:0033356	GO:GO:0052691	GO:GO:0071669	InterPro:IPR029044	EntrezGene:LOC100256140
wikigene:LOC100256140	InterPro:Nucleotide-diphossugar_trans	PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF14
InterPro:RGP	InterPro:RGP_fam	SUPFAM:SSF53448	TIGR:TC62438	TIGR:TC65374	UniParc:UPI00015C7C52
ArrayExpress:VIT_01s0011g00160	EnsemblPlantsGene:VIT_01s0011g00160	EnsemblPlants:VIT_01s0011g00160.t01	unigene:Vvi.7148	RefSeq:XP_002263926	RefSeq:XP_002263926.1

Description

No Description!

Coordinates

chr1:-:258838..261831

Molecular Weight (calculated)

41003.3 Da

IEP (calculated)

5.744

GRAVY (calculated)

-0.202

Length

361 amino acids

Sequence
(BLAST)

001: MAAASVKPAL LLKDELDIVI PTIRNLDFLE MWRPFFEPYH LIIVQDGDPS KTIKVPEGFD YELYNRNDIN RILGPKASCI SFKDSACRCF GYMVSKKKYI
101: FTIDDDCFVA KDPSGKDINA LEQHIKNLLT PSTPFFFNTL YDPYRDGADF VRGYPFSLRE GVPTAVSHGL WLNIPDYDAP TQLVKPRERN TRYVDAVLTV
201: PKGTLFPMCG MNLAFNRELI GPAMYFGLMG DGQPIGRYDD MWAGWCMKVI CDHLGWGVKT GLPYIWHSKA SNPFVNLKKE YSGIYWQEEL IPFFQAATLP
301: KECTTVQQCY LELSKQVKAK LEKVDPYFVK LADAMITWIE AWDELNPSAG DSANLTNGSA K

Best Arabidopsis Sequence Match ( AT3G08900.1 )
(BLAST)

001: MAQLYSSVKP TPMLKDELDI VIPTIRNLDF LEMWRPFFEQ YHLIIVQDGD PSKVINIPVG FDYELYNRND INRILGPKAS CISFKDSACR CFGYMVSKKK
101: YIYTIDDDCF VAKDPTGKEI NALEQHIKNL LSPSTPHFFN TLYDPYRDGA DFVRGYPFSM REGAITAVSH GLWLNIPDYD APTQLVKPLE KNSRYVDAVM
201: TIPKGTLFPM CGMNLAFDRE LIGPAMYFGL MGDGQPIGRY DDMWAGWCVK VICDHMGWGV KTGLPYIWHS KASNPFVNLK KEYNGIFWQE EAIPFFQSVT
301: LPKECTSVQQ CYLELAKLVR EKLGKVDPYF ITLATGMVTW IEAWEELNSA EGTEAEAPKG KN

Arabidopsis Description

RGP3Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.