CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26446	Canola	cytosol	99.7	99.7
CDX78646	Canola	plasma membrane	98.81	97.07
CDX70629	Canola	peroxisome	97.91	96.19
CDX90981	Canola	cytosol, extracellular, peroxisome	97.91	96.19
CDX85541	Canola	peroxisome	97.31	95.6
Bra008683.1-P	Field mustard	cytosol	99.7	93.56
AT5G15650.1	Thale cress	cytosol	96.42	89.72
CDY34712	Canola	cytosol	93.73	87.96
CDY60468	Canola	cytosol, extracellular, peroxisome	93.43	87.68
CDX91983	Canola	cytosol	93.13	87.39
CDY43248	Canola	cytosol, extracellular, peroxisome	93.13	87.39
CDX74267	Canola	cytosol	93.13	87.39
CDX73947	Canola	cytosol	40.6	79.07
CDY27964	Canola	cytosol	62.99	74.04
CDY64941	Canola	cytosol	74.03	72.3
CDY00647	Canola	cytosol	61.79	70.89
CDY34025	Canola	cytosol	74.93	69.92
CDX83155	Canola	cytosol	74.63	69.64
CDY27965	Canola	cytosol	3.88	50.0
CDX85502	Canola	cytosol	14.03	43.52
CDX78695	Canola	cytosol	13.43	42.86
CDX69446	Canola	cytosol	44.48	42.82
CDY55583	Canola	cytosol	44.18	42.53
CDY38107	Canola	cytosol	13.73	29.49

Protein Annotations

EnsemblPlants:CDX69510	EnsemblPlantsGene:GSBRNA2T00135504001	GO:A0A078BXI9	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	InterPro:RGP_fam
KEGG:00520+5.4.99.30	PANTHER:PTHR31682	PANTHER:PTHR31682:SF15	PFAM:PF03214	ProteinID:CDX69510	ProteinID:CDX69510.1
SUPFAM:SSF53448	UniParc:UPI0004EDF710	MapMan:3.13.7.3	:	:	:

Description

BnaA10g18590D

Coordinates

chrLK031790:-:545954..547842

Molecular Weight (calculated)

37960.0 Da

IEP (calculated)

5.976

GRAVY (calculated)

-0.154

Length

335 amino acids

Sequence
(BLAST)

001: MVDPANTVGI PVNPTPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPTKKIH VPEGYDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPA GKAVNALEQH IKNLLCPSTP FLREGVSTAV SHGLWLNIPD YDAPTQLVKP KERNARYVDA VMTIPKGTLF PMCGMNLAFD
201: RDLIGPAMYF GLMGDGQPIG RYDDMWAGWC IKVICDHLGL GVKTGLPYIY HSKASNPFVN LKKEYKGIFW QEDIIPFFQN VKLSKEATTV QQCYIELSKM
301: VKEKLSSLDP YFDKLADAMV TWIEAWDELN PPATA

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.