CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023571.1-P	Field mustard	cytosol	93.52	95.28
CDX78695	Canola	cytosol	79.63	81.9
CDY38107	Canola	cytosol	69.44	48.08
CDX73947	Canola	cytosol	44.44	27.91
CDY55583	Canola	cytosol	88.89	27.59
CDX69446	Canola	cytosol	88.89	27.59
AT5G16510.2	Thale cress	cytosol	85.19	26.44
CDY27965	Canola	cytosol	5.56	23.08
PGSC0003DMT400059506	Potato	cytosol	66.67	20.69
Solyc04g051200.1.1	Tomato	cytosol, unclear	65.74	20.4
VIT_04s0023g00110.t01	Wine grape	cytosol	57.41	17.37
EES11595	Sorghum	cytosol	55.56	17.24
Os04t0660400-01	Rice	cytosol, plasma membrane, plastid	53.7	16.71
KRH00886	Soybean	cytosol, peroxisome, plastid	64.81	16.39
TraesCS2D01G498900.1	Wheat	cytosol, golgi, unclear	52.78	16.38
TraesCS2B01G526700.1	Wheat	cytosol, golgi	52.78	16.38
CDY00647	Canola	cytosol	43.52	16.1
TraesCS2A01G498600.1	Wheat	cytosol, unclear	51.85	16.09
KRH40343	Soybean	cytosol, extracellular, plastid	62.96	15.93
HORVU2Hr1G111070.2	Barley	cytosol	50.93	15.8
GSMUA_Achr7P00470_001	Banana	cytosol	45.37	14.24
Zm00001d001979_P002	Maize	extracellular, vacuole	55.56	14.18
CDY26446	Canola	cytosol	43.52	14.03
CDX69510	Canola	cytosol	43.52	14.03
CDX90981	Canola	cytosol, extracellular, peroxisome	43.52	13.78
CDX85541	Canola	peroxisome	43.52	13.78
CDY64941	Canola	cytosol	43.52	13.7
CDX78646	Canola	plasma membrane	42.59	13.49
CDY60468	Canola	cytosol, extracellular, peroxisome	44.44	13.45
CDY43248	Canola	cytosol, extracellular, peroxisome	44.44	13.45
CDY34712	Canola	cytosol	44.44	13.45
CDX91983	Canola	cytosol	44.44	13.45
CDX74267	Canola	cytosol	44.44	13.45
CDX70629	Canola	peroxisome	41.67	13.2
CDY34025	Canola	cytosol	41.67	12.53
CDX83155	Canola	cytosol	41.67	12.53
CDY27964	Canola	cytosol	24.07	9.12

Protein Annotations

EnsemblPlants:CDX85502	EnsemblPlantsGene:GSBRNA2T00143209001	GO:A0A078D8U3	InterPro:RGP_fam	KEGG:00520+5.4.99.30	PANTHER:PTHR31682
PANTHER:PTHR31682:SF4	PFAM:PF03214	ProteinID:CDX85502	ProteinID:CDX85502.1	UniParc:UPI0004EDD1F3	MapMan:3.13.7.3

Description

BnaA02g03110D

Coordinates

chrLK031842:-:408458..408784

Molecular Weight (calculated)

12030.4 Da

IEP (calculated)

5.741

GRAVY (calculated)

-0.281

Length

108 amino acids

Sequence
(BLAST)

001: MCWKHVVDHL GYGVKTGLPY VWRNERGDAV ESLRKKWEGK GSMKLMEKSV PFFESLKLPE SAVTVEDCVV ELAKAVKEQL GSGDPAFTQA ADAMVNWVQL
101: WSEVNSSG

Best Arabidopsis Sequence Match ( AT5G16510.1 )
(BLAST)

001: MSLAEINKNE VDIVIGALNA DLTQFLTSWR PFFSGFHLIV VKDPELKEEL NIPEGFDVDV YSKTDMEKVV GASNSTMFSG YSCRYFGYLV SKKKYIVSID
101: DDCVPAKDPK GFLVDAVTQH VINLENPATP LFFNTLYDPY CEGADFVRGY PFSLRSGVPC AASCGLWLNL ADLDAPTQAL KTEKRNTAYV DAVMTVPAKA
201: MLPISGINIA FNRELVGPAL VPALRLAGEG KVRWETLEDV WCGMCLKHIS DHLGYGVKTG LPYVWRNERG DAVESLRKKW EGMKLMEKSV PFFDSLKLPE
301: TALKVEDCVI ELAKAVKEQL GSDDPAFTQA ADAMVKWVQL WNSVNSSA

Arabidopsis Description

RGP5Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q2T5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.