Factsheet for Zm00001d014000_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P32910_001	Banana	cytosol	33.22	36.3
Zm00001d022085_P001	Maize	cytosol, plastid	44.41	36.29
KRH75101	Soybean	endoplasmic reticulum	43.39	34.78
Zm00001d006820_P001	Maize	cytosol	43.05	34.6
KRH70960	Soybean	endoplasmic reticulum	43.05	34.51
Zm00001d013751_P005	Maize	plastid	42.03	34.07
Zm00001d033174_P001	Maize	plasma membrane	42.03	34.07
Zm00001d001979_P002	Maize	extracellular, vacuole	26.78	18.68
Zm00001d042881_P001	Maize	extracellular	3.39	14.71
Zm00001d012683_P001	Maize	cytosol, nucleus, peroxisome	15.25	13.39

Protein Annotations

EnsemblPlants:Zm00001d014000_P001	EnsemblPlants:Zm00001d014000_T001	EnsemblPlantsGene:Zm00001d014000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016866	GO:GO:0030244
InterPro:RGP_fam	KEGG:00520+5.4.99.30	PANTHER:PTHR31682	PANTHER:PTHR31682:SF13	PFAM:PF03214	ProteinID:AQK65024.1
SEG:seg	UniParc:UPI0008438EEE	UniProt:A0A1D6GPC5	MapMan:3.13.7.3	:	:

Description

Probable UDP-arabinopyranose mutase 5

Coordinates

chr5:+:28090093..28092999

Molecular Weight (calculated)

32510.1 Da

IEP (calculated)

8.070

GRAVY (calculated)

-0.174

Length

295 amino acids

Sequence
(BLAST)

001: MEGLHAQSAA CHRQRAILSI HARPCAKSSL DAPRRLAQPV EQIRVDPVSI SRQLGEFRRE CRPPPFDSDA PRTTPPKPSS KSALCKWWRS LAPALLAVAL
101: AITVAALRPT TEHADAKGRP PLWFGPGGVF KVALFADLHY GEDAWTDWGP AQDAASDRVM AAVLDAENPA NNTHLYGLLC LLLMQVAKDP SGKDINALEQ
201: HIKNLLSPST PFFFNTLYDP YRVGANFVRG YPYSLREGVP TVVSHELWLN IPDCDAPTQL VKPLERNTRY VDAILTIPKG TLFPMCGMNL AFDPI

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.