Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65102 | Canola | cytosol | 97.96 | 97.96 |
| AT2G19570.1 | Thale cress | cytosol | 85.37 | 83.39 |
| CDY30209 | Canola | cytosol | 77.21 | 78.28 |
| CDY54276 | Canola | cytosol | 76.87 | 72.2 |
| VIT_11s0016g02340.t01 | Wine grape | cytosol | 64.97 | 62.22 |
| HORVU3Hr1G020270.1 | Barley | extracellular, peroxisome | 14.97 | 61.97 |
| HORVU4Hr1G074340.1 | Barley | extracellular, peroxisome | 14.29 | 59.15 |
| HORVU5Hr1G034090.1 | Barley | mitochondrion | 8.84 | 59.09 |
| HORVU5Hr1G075600.1 | Barley | mitochondrion | 8.84 | 59.09 |
| KRH60135 | Soybean | cytosol | 58.5 | 58.7 |
| KRH49056 | Soybean | plastid | 55.44 | 58.63 |
| KRH41424 | Soybean | plasma membrane | 54.42 | 57.76 |
| CDY30210 | Canola | cytosol | 54.76 | 57.71 |
| CDY54269 | Canola | cytosol | 53.74 | 56.63 |
| GSMUA_Achr7P24040_001 | Banana | cytosol | 53.06 | 54.93 |
| HORVU4Hr1G083900.1 | Barley | cytosol, mitochondrion, plastid | 24.83 | 52.52 |
| PGSC0003DMT400020044 | Potato | cytosol | 57.82 | 52.47 |
| Solyc07g021750.1.1 | Tomato | cytosol | 57.82 | 52.15 |
| GSMUA_Achr3P32380_001 | Banana | cytosol | 35.37 | 50.49 |
| Os01t0712700-01 | Rice | cytosol | 51.36 | 48.4 |
| HORVU3Hr1G067290.1 | Barley | cytosol | 51.02 | 48.39 |
| TraesCS3A01G249300.1 | Wheat | cytosol | 51.02 | 48.39 |
| TraesCS3B01G278200.1 | Wheat | cytosol | 50.68 | 48.06 |
| TraesCS3D01G249300.1 | Wheat | cytosol | 50.68 | 48.06 |
| KRH63089 | Soybean | cytosol | 30.27 | 47.85 |
| Zm00001d011710_P001 | Maize | cytosol, extracellular | 49.66 | 46.79 |
| HORVU4Hr1G036900.1 | Barley | cytosol, extracellular, mitochondrion | 23.47 | 46.31 |
| Zm00001d043674_P001 | Maize | cytosol | 49.32 | 45.89 |
| Os06t0611600-00 | Rice | mitochondrion | 32.31 | 45.24 |
| EES03512 | Sorghum | cytosol | 48.3 | 44.94 |
| CDY54272 | Canola | cytosol | 42.52 | 44.8 |
| CDY54275 | Canola | mitochondrion | 39.8 | 40.91 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, golgi | 46.26 | 34.34 |
| OQU91901 | Sorghum | cytosol, plastid | 23.13 | 22.82 |
Protein Annotations
| KEGG:00240+3.5.4.5 | KEGG:00983+3.5.4.5 | Gene3D:3.40.140.10 | MapMan:6.2.4.2 | GO:A0A078J007 | UniProt:A0A078J007 |
| InterPro:APOBEC/CMP_deaminase_Zn-bd | EnsemblPlants:CDY58323 | ProteinID:CDY58323 | ProteinID:CDY58323.1 | InterPro:CMP_dCMP_dom | InterPro:Cyd/dCyd_deaminase_Zn-bd |
| InterPro:Cyt_deam_dimer | InterPro:Cytidine_deaminase-like | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004126 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009972 |
| GO:GO:0009987 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00023459001 | InterPro:IPR002125 | PFAM:PF00383 | PFAM:PF08211 |
| PIRSF:PIRSF006334 | ScanProsite:PS00903 | PFscan:PS51747 | PANTHER:PTHR11644 | PANTHER:PTHR11644:SF2 | MetaCyc:PWY-6556 |
| MetaCyc:PWY-7181 | MetaCyc:PWY-7193 | MetaCyc:PWY-7199 | SUPFAM:SSF53927 | TIGRFAMs:TIGR01355 | UniParc:UPI0004EDC09C |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng32980DBnaCnng32980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J007]
Coordinates
chrLK033658:-:25365..26249
Molecular Weight (calculated)
31865.9 Da
IEP (calculated)
5.707
GRAVY (calculated)
-0.037
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKPSFVISS EEAESAANQL GVSVLQLLPS LVNPAKSFAR PPISKFHVGA VGLGSSGRIF LGVNVEFPGL PLHHSIHAEQ FLVTNLTLNG ERHLRNFAVS
101: AAPCGHCRQF LQEIRDASEI RLIITDPNAT ADPDADSDGF LRLGSILPHR FGPEDLLEKD FPLILEHHDN NLTISDLDPI CNGNTVELKR TALAAANRSY
201: APYSLCPSGV ALVDCDGKVY RGWYMESAAY NPSLGPVQAA LVDYIANGGG GGYERIVGAV LVEKEDAVVR QEHTARLLIQ MISPKCDFSV YHCH
101: AAPCGHCRQF LQEIRDASEI RLIITDPNAT ADPDADSDGF LRLGSILPHR FGPEDLLEKD FPLILEHHDN NLTISDLDPI CNGNTVELKR TALAAANRSY
201: APYSLCPSGV ALVDCDGKVY RGWYMESAAY NPSLGPVQAA LVDYIANGGG GGYERIVGAV LVEKEDAVVR QEHTARLLIQ MISPKCDFSV YHCH
001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A
Arabidopsis Description
CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.