Factsheet for HORVU3Hr1G020270.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
peroxisome 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, peroxisome
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	extracellular, nucleus, plastid
PProwler:	mitochondrion
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G075600.1	Barley	mitochondrion	53.52	86.36
HORVU5Hr1G034090.1	Barley	mitochondrion	53.52	86.36
HORVU4Hr1G074340.1	Barley	extracellular, peroxisome	84.51	84.51
HORVU4Hr1G083900.1	Barley	cytosol, mitochondrion, plastid	88.73	45.32
HORVU4Hr1G036900.1	Barley	cytosol, extracellular, mitochondrion	80.28	38.26
Os06t0611600-00	Rice	mitochondrion	69.01	23.33
GSMUA_Achr3P32380_001	Banana	cytosol	63.38	21.84
KRH63089	Soybean	cytosol	53.52	20.43
HORVU3Hr1G067290.1	Barley	cytosol	88.73	20.32
TraesCS3D01G249300.1	Wheat	cytosol	87.32	20.0
TraesCS3B01G278200.1	Wheat	cytosol	87.32	20.0
TraesCS3A01G249300.1	Wheat	cytosol	87.32	20.0
Os01t0712700-01	Rice	cytosol	76.06	17.31
Zm00001d011710_P001	Maize	cytosol, extracellular	74.65	16.99
Zm00001d043674_P001	Maize	cytosol	74.65	16.77
GSMUA_Achr7P24040_001	Banana	cytosol	66.2	16.55
EES03512	Sorghum	cytosol	73.24	16.46
AT4G29630.1	Thale cress	cytosol	50.7	16.14
KRH60135	Soybean	cytosol	63.38	15.36
Bra039004.1-P	Field mustard	cytosol	61.97	15.02
CDY58323	Canola	cytosol	61.97	14.97
CDY65102	Canola	cytosol	61.97	14.97
CDY30209	Canola	cytosol	60.56	14.83
KRH49056	Soybean	plastid	57.75	14.75
VIT_11s0016g02340.t01	Wine grape	cytosol	63.38	14.66
CDY54276	Canola	cytosol	61.97	14.06
Bra024140.1-P	Field mustard	cytosol	60.56	14.01
PGSC0003DMT400020044	Potato	cytosol	61.97	13.58
Solyc07g021750.1.1	Tomato	cytosol	61.97	13.5
AT4G29610.1	Thale cress	cytosol	54.93	13.31
AT2G19570.1	Thale cress	cytosol	54.93	12.96
CDY30210	Canola	cytosol	50.7	12.9
Bra024141.1-P	Field mustard	cytosol	50.7	12.9
AT4G29600.1	Thale cress	cytosol	54.93	12.7
AT4G29570.1	Thale cress	cytosol	52.11	12.63
CDY54269	Canola	cytosol	49.3	12.54
OQU91901	Sorghum	cytosol, plastid	52.11	12.42
KRH41424	Soybean	plasma membrane	47.89	12.27
AT4G29620.1	Thale cress	cytosol	54.93	11.57
CDY54272	Canola	cytosol	39.44	10.04
AT4G29640.1	Thale cress	cytosol	47.89	9.83
AT4G29650.1	Thale cress	cytosol	33.8	9.56
CDY54275	Canola	mitochondrion	38.03	9.44
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, golgi	49.3	8.84
AT4G29580.2	Thale cress	nucleus	39.44	6.29

Protein Annotations

EnsemblPlants:HORVU3Hr1G020270.1	EnsemblPlantsGene:HORVU3Hr1G020270	Gene3D:3.40.140.10	GO:GO:0003674	GO:GO:0003824	InterPro:CMP_dCMP_dom
InterPro:Cytidine_deaminase-like	InterPro:IPR002125	PANTHER:PTHR11644	PFAM:PF00383	PFscan:PS51747	SUPFAM:SSF53927
UniParc:UPI0002965FBE	UniProt:M0VJH6	MapMan:6.2.4.2	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:62465303..62465515

Molecular Weight (calculated)

7552.2 Da

IEP (calculated)

7.515

GRAVY (calculated)

0.441

Length

71 amino acids

Sequence
(BLAST)

1: RPPISRFPVG AVGLGESGRV YVGVNLDFLG APLSQAVHAE QFLIANVAAV GEPVLRIIAV SHMPCDHCRQ F

Best Arabidopsis Sequence Match ( AT2G19570.1 )
(BLAST)

001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A

Arabidopsis Description

CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.