CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41424	Soybean	plasma membrane	81.91	86.64
KRH49056	Soybean	plastid	62.8	66.19
HORVU3Hr1G020270.1	Barley	extracellular, peroxisome	15.36	63.38
VIT_11s0016g02340.t01	Wine grape	cytosol	64.16	61.24
CDY30209	Canola	cytosol	60.41	61.03
HORVU4Hr1G074340.1	Barley	extracellular, peroxisome	14.33	59.15
HORVU5Hr1G075600.1	Barley	mitochondrion	8.87	59.09
HORVU5Hr1G034090.1	Barley	mitochondrion	8.87	59.09
CDY58323	Canola	cytosol	58.7	58.5
Bra024140.1-P	Field mustard	cytosol	61.09	58.31
Bra039004.1-P	Field mustard	cytosol	58.02	58.02
CDY65102	Canola	cytosol	58.02	57.82
AT2G19570.1	Thale cress	cytosol	59.04	57.48
CDY54276	Canola	cytosol	60.41	56.55
HORVU4Hr1G083900.1	Barley	cytosol, mitochondrion, plastid	26.28	55.4
GSMUA_Achr7P24040_001	Banana	cytosol	52.56	54.23
PGSC0003DMT400020044	Potato	cytosol	57.68	52.16
KRH63089	Soybean	cytosol	33.11	52.15
Solyc07g021750.1.1	Tomato	cytosol	57.68	51.84
GSMUA_Achr3P32380_001	Banana	cytosol	35.84	50.97
HORVU4Hr1G036900.1	Barley	cytosol, extracellular, mitochondrion	24.91	48.99
AT4G29630.1	Thale cress	cytosol	37.2	48.88
AT4G29610.1	Thale cress	cytosol	48.81	48.81
HORVU3Hr1G067290.1	Barley	cytosol	50.85	48.06
TraesCS3B01G278200.1	Wheat	cytosol	50.51	47.74
Bra024141.1-P	Field mustard	cytosol	45.39	47.67
CDY30210	Canola	cytosol	45.39	47.67
AT4G29600.1	Thale cress	cytosol	49.83	47.56
TraesCS3D01G249300.1	Wheat	cytosol	50.17	47.42
AT4G29650.1	Thale cress	cytosol	40.61	47.41
TraesCS3A01G249300.1	Wheat	cytosol	49.83	47.1
CDY54269	Canola	cytosol	44.71	46.95
Zm00001d011710_P001	Maize	cytosol, extracellular	48.81	45.83
Os06t0611600-00	Rice	mitochondrion	32.42	45.24
Os01t0712700-01	Rice	cytosol	47.78	44.87
Zm00001d043674_P001	Maize	cytosol	47.44	43.99
EES03512	Sorghum	cytosol	46.76	43.35
AT4G29620.1	Thale cress	cytosol	47.78	41.54
AT4G29570.1	Thale cress	cytosol	39.93	39.93
CDY54272	Canola	cytosol	35.84	37.63
AT4G29640.1	Thale cress	cytosol	43.0	36.42
CDY54275	Canola	mitochondrion	34.47	35.31
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, golgi	45.05	33.33
AT4G29580.2	Thale cress	nucleus	36.86	24.27
OQU91901	Sorghum	cytosol, plastid	20.48	20.13

Protein Annotations

KEGG:00240+3.5.4.5	KEGG:00983+3.5.4.5	EntrezGene:100795350	Gene3D:3.40.140.10	MapMan:6.2.4.2	EMBL:ACUP02003351
InterPro:APOBEC/CMP_deaminase_Zn-bd	InterPro:CMP_dCMP_dom	InterPro:Cyd/dCyd_deaminase_Zn-bd	InterPro:Cyt_deam_dimer	InterPro:Cytidine_deaminase-like	EnsemblPlantsGene:GLYMA_05G222300
GO:GO:0003674	GO:GO:0003824	GO:GO:0004126	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009972	GO:GO:0009987	GO:GO:0016787	UniProt:I1K641
InterPro:IPR002125	EnsemblPlants:KRH60135	ProteinID:KRH60135	ProteinID:KRH60135.1	PFAM:PF00383	PFAM:PF08211
PIRSF:PIRSF006334	ScanProsite:PS00903	PFscan:PS51747	PANTHER:PTHR11644	PANTHER:PTHR11644:SF15	MetaCyc:PWY-6556
MetaCyc:PWY-7181	MetaCyc:PWY-7193	MetaCyc:PWY-7199	SUPFAM:SSF53927	TIGRFAMs:TIGR01355	UniParc:UPI0002339402
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:40171876..40173398

Molecular Weight (calculated)

31204.4 Da

IEP (calculated)

6.354

GRAVY (calculated)

0.167

Length

293 amino acids

Sequence
(BLAST)

001: MDPPPSKFVI EASEALALAE SAAVTLPELL PTLVPAAQPL ARPPISKFSV AAVGLAPSGR IFVGVNLEFP GLPLHHSVHA EQFLITNLSL NAEPHLVSLA
101: VSAAPCGHCR QFLQELRAAA DVKILVTSEA TAEFRALSDF LPHRFGPHDL LPLEAPLLLE PHHYTLTLQH YLNAHVPNHK LKIAALEAAN KSHAPYSGSP
201: SGVALLDCHG NVFKGSYMES AAFNPSLGPV QAALVAFVAG GGGDYDRIVG AALVEMDGAV VKQEHTARLL IHSISPNCQF DTFLCHNNNN NEY

Best Arabidopsis Sequence Match ( AT2G19570.1 )
(BLAST)

001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A

Arabidopsis Description

CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.