Factsheet for GSMUA_Achr3P32380_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G020270.1	Barley	extracellular, peroxisome	21.84	63.38
HORVU4Hr1G074340.1	Barley	extracellular, peroxisome	21.84	63.38
HORVU5Hr1G075600.1	Barley	mitochondrion	13.11	61.36
HORVU5Hr1G034090.1	Barley	mitochondrion	13.11	61.36
HORVU4Hr1G083900.1	Barley	cytosol, mitochondrion, plastid	38.84	57.55
HORVU4Hr1G036900.1	Barley	cytosol, extracellular, mitochondrion	37.38	51.68
GSMUA_Achr7P24040_001	Banana	cytosol	68.45	49.65
KRH63089	Soybean	cytosol	41.26	45.7
Os06t0611600-00	Rice	mitochondrion	43.2	42.38
CDY30209	Canola	cytosol	53.88	38.28
AT4G29630.1	Thale cress	cytosol	40.78	37.67
Zm00001d011710_P001	Maize	cytosol, extracellular	56.8	37.5
TraesCS3D01G249300.1	Wheat	cytosol	56.31	37.42
TraesCS3B01G278200.1	Wheat	cytosol	56.31	37.42
TraesCS3A01G249300.1	Wheat	cytosol	56.31	37.42
EES03512	Sorghum	cytosol	57.28	37.34
Os01t0712700-01	Rice	cytosol	56.31	37.18
HORVU3Hr1G067290.1	Barley	cytosol	55.83	37.1
Zm00001d043674_P001	Maize	cytosol	56.31	36.71
VIT_11s0016g02340.t01	Wine grape	cytosol	54.37	36.48
KRH60135	Soybean	cytosol	50.97	35.84
CDY54276	Canola	cytosol	54.37	35.78
KRH49056	Soybean	plastid	48.06	35.61
Bra024140.1-P	Field mustard	cytosol	52.91	35.5
Bra039004.1-P	Field mustard	cytosol	50.49	35.49
CDY58323	Canola	cytosol	50.49	35.37
KRH41424	Soybean	plasma membrane	47.09	35.02
CDY65102	Canola	cytosol	49.51	34.69
AT2G19570.1	Thale cress	cytosol	50.49	34.55
PGSC0003DMT400020044	Potato	cytosol	50.49	32.1
Solyc07g021750.1.1	Tomato	cytosol	50.49	31.9
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, golgi	58.25	30.3
AT4G29600.1	Thale cress	cytosol	44.17	29.64
AT4G29610.1	Thale cress	cytosol	41.26	29.01
CDY30210	Canola	cytosol	36.89	27.24
Bra024141.1-P	Field mustard	cytosol	36.89	27.24
CDY54269	Canola	cytosol	36.41	26.88
CDY54272	Canola	cytosol	34.47	25.45
AT4G29650.1	Thale cress	cytosol	30.58	25.1
AT4G29620.1	Thale cress	cytosol	38.84	23.74
AT4G29570.1	Thale cress	cytosol	32.52	22.87
CDY54275	Canola	mitochondrion	28.16	20.28
AT4G29640.1	Thale cress	cytosol	33.01	19.65
OQU91901	Sorghum	cytosol, plastid	26.7	18.46
AT4G29580.2	Thale cress	nucleus	29.61	13.71

Protein Annotations

KEGG:00240+3.5.4.5	KEGG:00983+3.5.4.5	Gene3D:3.40.140.10	MapMan:6.2.4.2	InterPro:APOBEC/CMP_deaminase_Zn-bd	InterPro:CMP_dCMP_dom
InterPro:Cyd/dCyd_deaminase_Zn-bd	InterPro:Cytidine_deaminase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0004126	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009972
GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr3G32380_001	EnsemblPlants:GSMUA_Achr3P32380_001	EnsemblPlants:GSMUA_Achr3T32380_001	InterPro:IPR002125
UniProt:M0SJQ2	PFAM:PF00383	PFAM:PF08211	ScanProsite:PS00903	PFscan:PS51747	PANTHER:PTHR11644
SUPFAM:SSF53927	UniParc:UPI0002949FAF	SEG:seg	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G32380_001]

Coordinates

chr3:-:30319866..30321033

Molecular Weight (calculated)

21907.5 Da

IEP (calculated)

6.626

GRAVY (calculated)

0.151

Length

206 amino acids

Sequence
(BLAST)

001: MEEKPARLTG ARFLIQAEEA EAMAKEAGVA AVTELLPLLV PAAQRLARPP ISNYRVGAVG LGTSGRIFLG ANLEFPGLPL NHSVHAEQFL VANAAAHGET
101: GIRCFAASTV PCGHCRQFLQ EIRGSAEIQI LVTSDEEPAF RPLASLLPLP FGPHDLLHKG VPLLLEPHDN ALGATVVPGG GGGRASYVLF LFYYPSKTIV
201: ERNLTN

Best Arabidopsis Sequence Match ( AT2G19570.1 )
(BLAST)

001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A

Arabidopsis Description

CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.