Factsheet for Solyc07g021750.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020044	Potato	cytosol	90.49	91.05
HORVU3Hr1G020270.1	Barley	extracellular, peroxisome	13.5	61.97
HORVU5Hr1G075600.1	Barley	mitochondrion	7.98	59.09
HORVU5Hr1G034090.1	Barley	mitochondrion	7.98	59.09
VIT_11s0016g02340.t01	Wine grape	cytosol	55.52	58.96
KRH49056	Soybean	plastid	49.69	58.27
CDY65102	Canola	cytosol	52.45	58.16
CDY58323	Canola	cytosol	52.15	57.82
HORVU4Hr1G074340.1	Barley	extracellular, peroxisome	12.58	57.75
KRH60135	Soybean	cytosol	51.84	57.68
Bra039004.1-P	Field mustard	cytosol	51.84	57.68
CDY30209	Canola	cytosol	51.23	57.59
AT2G19570.1	Thale cress	cytosol	52.15	56.48
KRH41424	Soybean	plasma membrane	47.55	55.96
GSMUA_Achr7P24040_001	Banana	cytosol	48.47	55.63
Bra024140.1-P	Field mustard	cytosol	51.53	54.72
CDY54276	Canola	cytosol	51.53	53.67
GSMUA_Achr3P32380_001	Banana	cytosol	31.9	50.49
Bra024141.1-P	Field mustard	cytosol	42.33	49.46
CDY30210	Canola	cytosol	42.33	49.46
HORVU4Hr1G083900.1	Barley	cytosol, mitochondrion, plastid	20.86	48.92
CDY54269	Canola	cytosol	41.72	48.75
AT4G29610.1	Thale cress	cytosol	43.56	48.46
Zm00001d011710_P001	Maize	cytosol, extracellular	46.01	48.08
AT4G29650.1	Thale cress	cytosol	36.81	47.81
Os01t0712700-01	Rice	cytosol	45.71	47.76
KRH63089	Soybean	cytosol	26.99	47.31
HORVU3Hr1G067290.1	Barley	cytosol	44.48	46.77
AT4G29600.1	Thale cress	cytosol	43.87	46.58
TraesCS3B01G278200.1	Wheat	cytosol	44.17	46.45
EES03512	Sorghum	cytosol	44.79	46.2
TraesCS3A01G249300.1	Wheat	cytosol	43.87	46.13
Zm00001d043674_P001	Maize	cytosol	44.48	45.89
TraesCS3D01G249300.1	Wheat	cytosol	43.56	45.81
AT4G29630.1	Thale cress	cytosol	30.37	44.39
HORVU4Hr1G036900.1	Barley	cytosol, extracellular, mitochondrion	20.25	44.3
Os06t0611600-00	Rice	mitochondrion	28.22	43.81
AT4G29620.1	Thale cress	cytosol	41.72	40.36
AT4G29570.1	Thale cress	cytosol	35.58	39.59
CDY54272	Canola	cytosol	31.9	37.28
CDY54275	Canola	mitochondrion	32.21	36.71
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, golgi	44.17	36.36
AT4G29640.1	Thale cress	cytosol	38.34	36.13
AT4G29580.2	Thale cress	nucleus	34.05	24.94
OQU91901	Sorghum	cytosol, plastid	18.1	19.8

Protein Annotations

KEGG:00240+3.5.4.5	KEGG:00983+3.5.4.5	Gene3D:3.40.140.10	MapMan:6.2.4.2	InterPro:APOBEC/CMP_deaminase_Zn-bd	InterPro:CMP_dCMP_dom
InterPro:Cyd/dCyd_deaminase_Zn-bd	InterPro:Cyt_deam_dimer	InterPro:Cytidine_deaminase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0004126
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009972
GO:GO:0009987	GO:GO:0016787	InterPro:IPR002125	UniProt:K4CD31	PFAM:PF00383	PFAM:PF08211
PIRSF:PIRSF006334	ScanProsite:PS00903	PFscan:PS51747	PANTHER:PTHR11644	PANTHER:PTHR11644:SF2	SUPFAM:SSF53927
EnsemblPlantsGene:Solyc07g021750.1	EnsemblPlants:Solyc07g021750.1.1	TIGRFAMs:TIGR01355	UniParc:UPI000276C9F1	SEG:seg	:

Description

Cytidine deaminase [Source:UniProtKB/TrEMBL;Acc:K4CD31]

Coordinates

chr7:-:21306323..21307303

Molecular Weight (calculated)

35359.2 Da

IEP (calculated)

5.669

GRAVY (calculated)

-0.036

Length

326 amino acids

Sequence
(BLAST)

001: MDQLQFVVEA SEADSITQKL GLPSVHHLLP LLVQPAQTLA RPPISNYHVA AVGLGSDGRV FLGVNLEFPG LPLHHSVHAE QFLITNLAVH LCPRLVAFAV
101: SAAPCGHCRQ FLQELRNSSD LQIHITSQHQ NNPDVIFEPL REILPNPFGP FDLLDDETPL LLERHNNNLI LSYEINHVGD LCNGFSDDDL KSGKNLSNGF
201: YKLTETESTL LRIAALGGAN NSHAPYSECP SGVAIMDCDG KIYKGSYVES AAYNPSLGPM QAALVAFVAE GGGGYERIVA AALVEKEGAK VRQEDTARIF
301: LKLVSPKCDL KVFHCCVAAE NGCKKD

Best Arabidopsis Sequence Match ( AT2G19570.1 )
(BLAST)

001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A

Arabidopsis Description

CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.