Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G29570.1 | Thale cress | cytosol | 35.96 | 54.61 |
| CDY54272 | Canola | cytosol | 28.31 | 45.16 |
| AT4G29610.1 | Thale cress | cytosol | 29.21 | 44.37 |
| AT4G29650.1 | Thale cress | cytosol | 23.6 | 41.83 |
| AT4G29630.1 | Thale cress | cytosol | 20.67 | 41.26 |
| VIT_11s0016g02340.t01 | Wine grape | cytosol | 27.64 | 40.07 |
| AT4G29600.1 | Thale cress | cytosol | 27.42 | 39.74 |
| KRH49056 | Soybean | plastid | 24.72 | 39.57 |
| HORVU3Hr1G020270.1 | Barley | extracellular, peroxisome | 6.29 | 39.44 |
| AT2G19570.1 | Thale cress | cytosol | 26.52 | 39.2 |
| CDY54275 | Canola | mitochondrion | 25.17 | 39.16 |
| KRH41424 | Soybean | plasma membrane | 23.82 | 38.27 |
| HORVU4Hr1G074340.1 | Barley | extracellular, peroxisome | 6.07 | 38.03 |
| AT4G29620.1 | Thale cress | cytosol | 28.54 | 37.69 |
| KRH60135 | Soybean | cytosol | 24.27 | 36.86 |
| GSMUA_Achr7P24040_001 | Banana | cytosol | 23.37 | 36.62 |
| AT4G29640.1 | Thale cress | cytosol | 27.42 | 35.26 |
| PGSC0003DMT400020044 | Potato | cytosol | 25.17 | 34.57 |
| HORVU5Hr1G034090.1 | Barley | mitochondrion | 3.37 | 34.09 |
| HORVU5Hr1G075600.1 | Barley | mitochondrion | 3.37 | 34.09 |
| Solyc07g021750.1.1 | Tomato | cytosol | 24.94 | 34.05 |
| Os06t0611600-00 | Rice | mitochondrion | 14.83 | 31.43 |
| Zm00001d011710_P001 | Maize | cytosol, extracellular | 22.02 | 31.41 |
| Os01t0712700-01 | Rice | cytosol | 21.8 | 31.09 |
| Zm00001d043674_P001 | Maize | cytosol | 22.02 | 31.01 |
| HORVU4Hr1G083900.1 | Barley | cytosol, mitochondrion, plastid | 9.66 | 30.94 |
| HORVU3Hr1G067290.1 | Barley | cytosol | 21.12 | 30.32 |
| KRH63089 | Soybean | cytosol | 12.58 | 30.11 |
| TraesCS3A01G249300.1 | Wheat | cytosol | 20.9 | 30.0 |
| TraesCS3B01G278200.1 | Wheat | cytosol | 20.9 | 30.0 |
| EES03512 | Sorghum | cytosol | 21.12 | 29.75 |
| TraesCS3D01G249300.1 | Wheat | cytosol | 20.67 | 29.68 |
| GSMUA_Achr3P32380_001 | Banana | cytosol | 13.71 | 29.61 |
| HORVU4Hr1G036900.1 | Barley | cytosol, extracellular, mitochondrion | 9.66 | 28.86 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, golgi | 19.78 | 22.22 |
| OQU91901 | Sorghum | cytosol, plastid | 12.36 | 18.46 |
Protein Annotations
| KEGG:00240+3.5.4.5 | KEGG:00983+3.5.4.5 | Gene3D:3.40.140.10 | MapMan:6.2.4.2 | EntrezGene:829079 | ProteinID:AAD30442.1 |
| ProteinID:AAD39264.1 | ProteinID:AEE85647.1 | ProteinID:AEE85648.1 | ArrayExpress:AT4G29580 | EnsemblPlantsGene:AT4G29580 | RefSeq:AT4G29580 |
| TAIR:AT4G29580 | RefSeq:AT4G29580-TAIR-G | EnsemblPlants:AT4G29580.2 | TAIR:AT4G29580.2 | ProteinID:CAB45318.1 | ProteinID:CAB79716.1 |
| InterPro:CMP_dCMP_dom | InterPro:Cyd/dCyd_deaminase_Zn-bd | InterPro:Cyt_deam_dimer | InterPro:Cytidine_deaminase-like | UniProt:F4JNN8 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004126 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009972 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0046872 | InterPro:IPR002125 |
| RefSeq:NP_001154274.1 | RefSeq:NP_194687.1 | PFAM:PF08211 | PO:PO:0000084 | PFscan:PS51747 | PANTHER:PTHR11644 |
| PANTHER:PTHR11644:SF2 | SUPFAM:SSF53927 | TIGRFAMs:TIGR01355 | UniParc:UPI0001A7B2E0 | : | : |
Description
Cytidine/deoxycytidylate deaminase family protein [Source:UniProtKB/TrEMBL;Acc:F4JNN8]
Coordinates
chr4:+:14510147..14512488
Molecular Weight (calculated)
49731.8 Da
IEP (calculated)
8.592
GRAVY (calculated)
-0.288
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQPPNPYAA LTPTEAESSG PFEPETLLPL INRALPLAQA LPSQSPLVAV GRGSSGRTFL GVNVELPGLS PLHSIHAGQF LVVHLALNNE RTLNCLAFSS
101: NGSYFDPPCP HCCQLLQEIR NASSTKLLIT DPSRQRDMSL STYLPQKYLS LYNEVPKYFF ARLLDENRNN GLTLINPNPI RDCLDSEICN HLSCRALKAA
201: NRSYAPYSKS PSGVALMDFQ GRVYSGWSIE SVANPILGAA QAALVDFMTN GGGHEFNNIV RGFLVEKRDA KLSHLATARE ILNKVAHFSF ILRVLHCHKI
301: QCFFTHESPS MSEKEDFANI LKDINSKRRR NIHHGTIYKT GDEKTLKFIL GVNYKDMEAV DEPPMRKRKV DELMHAVDPS NDSRFTFQTR VTRATCQKDE
401: DLRILTEVCR IKPKIQGTGE QSDGMTKLLM VSTKAIYLSG YRMIF
101: NGSYFDPPCP HCCQLLQEIR NASSTKLLIT DPSRQRDMSL STYLPQKYLS LYNEVPKYFF ARLLDENRNN GLTLINPNPI RDCLDSEICN HLSCRALKAA
201: NRSYAPYSKS PSGVALMDFQ GRVYSGWSIE SVANPILGAA QAALVDFMTN GGGHEFNNIV RGFLVEKRDA KLSHLATARE ILNKVAHFSF ILRVLHCHKI
301: QCFFTHESPS MSEKEDFANI LKDINSKRRR NIHHGTIYKT GDEKTLKFIL GVNYKDMEAV DEPPMRKRKV DELMHAVDPS NDSRFTFQTR VTRATCQKDE
401: DLRILTEVCR IKPKIQGTGE QSDGMTKLLM VSTKAIYLSG YRMIF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.