Factsheet for GSMUA_AchrUn_randomP02830_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, cytosol

Predictor Summary:

nucleus 2
golgi 1
plastid 1
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P24040_001	Banana	cytosol	48.48	67.61
HORVU5Hr1G075600.1	Barley	mitochondrion	6.82	61.36
HORVU5Hr1G034090.1	Barley	mitochondrion	6.82	61.36
GSMUA_Achr3P32380_001	Banana	cytosol	30.3	58.25
Zm00001d011710_P001	Maize	cytosol, extracellular	41.41	52.56
Os01t0712700-01	Rice	cytosol	40.91	51.92
Zm00001d043674_P001	Maize	cytosol	40.4	50.63
HORVU3Hr1G067290.1	Barley	cytosol	39.39	50.32
TraesCS3A01G249300.1	Wheat	cytosol	39.39	50.32
TraesCS3B01G278200.1	Wheat	cytosol	38.89	49.68
EES03512	Sorghum	cytosol	39.39	49.37
TraesCS3D01G249300.1	Wheat	cytosol	38.64	49.35
HORVU3Hr1G020270.1	Barley	extracellular, peroxisome	8.84	49.3
HORVU4Hr1G074340.1	Barley	extracellular, peroxisome	8.84	49.3
CDY30209	Canola	cytosol	34.85	47.59
VIT_11s0016g02340.t01	Wine grape	cytosol	36.11	46.58
CDY58323	Canola	cytosol	34.34	46.26
CDY65102	Canola	cytosol	33.84	45.58
Bra039004.1-P	Field mustard	cytosol	33.59	45.39
KRH49056	Soybean	plastid	31.82	45.32
HORVU4Hr1G083900.1	Barley	cytosol, mitochondrion, plastid	15.91	45.32
KRH60135	Soybean	cytosol	33.33	45.05
Bra024140.1-P	Field mustard	cytosol	34.85	44.95
AT2G19570.1	Thale cress	cytosol	33.84	44.52
CDY54276	Canola	cytosol	35.1	44.41
Solyc07g021750.1.1	Tomato	cytosol	36.36	44.17
KRH41424	Soybean	plasma membrane	30.81	44.04
PGSC0003DMT400020044	Potato	cytosol	35.86	43.83
Os06t0611600-00	Rice	mitochondrion	22.98	43.33
AT4G29650.1	Thale cress	cytosol	26.77	42.23
HORVU4Hr1G036900.1	Barley	cytosol, extracellular, mitochondrion	15.66	41.61
Bra024141.1-P	Field mustard	cytosol	26.52	37.63
CDY30210	Canola	cytosol	26.52	37.63
CDY54269	Canola	cytosol	26.26	37.28
AT4G29610.1	Thale cress	cytosol	27.53	37.2
AT4G29600.1	Thale cress	cytosol	27.78	35.83
AT4G29630.1	Thale cress	cytosol	18.94	33.63
KRH63089	Soybean	cytosol	15.4	32.8
AT4G29570.1	Thale cress	cytosol	23.48	31.74
AT4G29620.1	Thale cress	cytosol	26.77	31.45
CDY54272	Canola	cytosol	20.96	29.75
AT4G29640.1	Thale cress	cytosol	25.76	29.48
CDY54275	Canola	mitochondrion	17.93	24.83
OQU91901	Sorghum	cytosol, plastid	17.93	23.83
AT4G29580.2	Thale cress	nucleus	22.22	19.78

Protein Annotations

KEGG:00240+3.5.4.5	KEGG:00983+3.5.4.5	Gene3D:3.40.140.10	MapMan:6.2.4.2	InterPro:CMP_dCMP_dom	InterPro:Cyd/dCyd_deaminase_Zn-bd
InterPro:Cytidine_deaminase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0004126	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009972	GO:GO:0009987
GO:GO:0016787	EnsemblPlantsGene:GSMUA_AchrUn_randomG02830_001	EnsemblPlants:GSMUA_AchrUn_randomP02830_001	EnsemblPlants:GSMUA_AchrUn_randomT02830_001	InterPro:IPR002125	UniProt:M0U5U5
PFAM:PF08211	PFscan:PS51747	PANTHER:PTHR11644	PANTHER:PTHR11644:SF2	SUPFAM:SSF53927	UniParc:UPI000296F878
SEG:seg	:	:	:	:	:

Description

cytidine/deoxycytidylate deaminase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG02830_001]

Coordinates

chrchrUn_random:-:14043800..14045270

Molecular Weight (calculated)

41528.8 Da

IEP (calculated)

7.314

GRAVY (calculated)

0.052

Length

396 amino acids

Sequence
(BLAST)

001: MRWEGGKGKP NLYRLPSMEF RVGSVDRETE LNNGFFFSKI LCLVVKATFS VHLNSISSSK YNWHMPCPPP SPLFTSQLAG KTKDTNQFLS CICTFLSVCV
101: RVISIRFLIG EREEMEKPAR STVGKFVIEA EEAQAMAKES GVAAVRELLP LLVPAAQRLA RPPISNYRVG AVGLGASGRI FLGVNLEFPG LPLHHSVHAE
201: QFLMANANAH GEPSIGCDPA FRPLASLLPH PFGPPDLLHK DAPLLLEPHD NDFGALDATG VAVGGGGLCN GIGGGGLERR LREAAEGAAR SSHAPYSGCA
301: AGFAVADGGG RVYSGSYVES AAYNPSLGPA QAAMVACLAA GGGGEGEGGG WGIVAAALVE KETAAVSHEG TARIFLEAVA PGAHLKVYRF RPSTAV

Best Arabidopsis Sequence Match ( AT2G19570.1 )
(BLAST)

001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A

Arabidopsis Description

CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.