Factsheet for GSMUA_Achr7P24040_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P32380_001	Banana	cytosol	49.65	68.45
HORVU4Hr1G074340.1	Barley	extracellular, peroxisome	16.55	66.2
HORVU3Hr1G020270.1	Barley	extracellular, peroxisome	16.55	66.2
HORVU5Hr1G034090.1	Barley	mitochondrion	9.86	63.64
HORVU5Hr1G075600.1	Barley	mitochondrion	9.86	63.64
HORVU4Hr1G083900.1	Barley	cytosol, mitochondrion, plastid	28.52	58.27
Os01t0712700-01	Rice	cytosol	63.38	57.69
Zm00001d011710_P001	Maize	cytosol, extracellular	61.97	56.41
HORVU3Hr1G067290.1	Barley	cytosol	60.92	55.81
Os06t0611600-00	Rice	mitochondrion	41.2	55.71
TraesCS3B01G278200.1	Wheat	cytosol	60.56	55.48
TraesCS3A01G249300.1	Wheat	cytosol	60.56	55.48
TraesCS3D01G249300.1	Wheat	cytosol	60.21	55.16
CDY30209	Canola	cytosol	55.63	54.48
Zm00001d043674_P001	Maize	cytosol	60.21	54.11
Bra039004.1-P	Field mustard	cytosol	55.63	53.92
EES03512	Sorghum	cytosol	59.86	53.8
VIT_11s0016g02340.t01	Wine grape	cytosol	58.1	53.75
HORVU4Hr1G036900.1	Barley	cytosol, extracellular, mitochondrion	28.17	53.69
CDY58323	Canola	cytosol	54.93	53.06
CDY65102	Canola	cytosol	54.58	52.72
KRH60135	Soybean	cytosol	54.23	52.56
KRH41424	Soybean	plasma membrane	51.06	52.35
AT2G19570.1	Thale cress	cytosol	54.58	51.49
Bra024140.1-P	Field mustard	cytosol	55.28	51.14
KRH49056	Soybean	plastid	50.0	51.08
CDY54276	Canola	cytosol	55.99	50.8
PGSC0003DMT400020044	Potato	cytosol	56.34	49.38
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, golgi	67.61	48.48
Solyc07g021750.1.1	Tomato	cytosol	55.63	48.47
CDY30210	Canola	cytosol	44.01	44.8
Bra024141.1-P	Field mustard	cytosol	44.01	44.8
CDY54269	Canola	cytosol	43.66	44.44
AT4G29610.1	Thale cress	cytosol	45.07	43.69
KRH63089	Soybean	cytosol	28.52	43.55
AT4G29630.1	Thale cress	cytosol	34.15	43.5
AT4G29650.1	Thale cress	cytosol	38.38	43.43
AT4G29600.1	Thale cress	cytosol	46.83	43.32
AT4G29570.1	Thale cress	cytosol	38.73	37.54
AT4G29620.1	Thale cress	cytosol	42.25	35.61
CDY54272	Canola	cytosol	34.51	35.13
AT4G29640.1	Thale cress	cytosol	39.79	32.66
CDY54275	Canola	mitochondrion	31.69	31.47
AT4G29580.2	Thale cress	nucleus	36.62	23.37
OQU91901	Sorghum	cytosol, plastid	23.59	22.48

Protein Annotations

KEGG:00240+3.5.4.5	KEGG:00983+3.5.4.5	Gene3D:3.40.140.10	MapMan:6.2.4.2	InterPro:APOBEC/CMP_deaminase_Zn-bd	InterPro:CMP_dCMP_dom
InterPro:Cyd/dCyd_deaminase_Zn-bd	InterPro:Cyt_deam_dimer	InterPro:Cytidine_deaminase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0004126
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009972	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr7G24040_001	EnsemblPlants:GSMUA_Achr7P24040_001	EnsemblPlants:GSMUA_Achr7T24040_001
InterPro:IPR002125	UniProt:M0TK90	PFAM:PF00383	PFAM:PF08211	PIRSF:PIRSF006334	ScanProsite:PS00903
PFscan:PS51747	SUPFAM:SSF53927	TIGRFAMs:TIGR01355	UniParc:UPI0002950EAA	SEG:seg	:

Description

Putative Cytidine deaminase [Source:GMGC_GENE;Acc:GSMUA_Achr7G24040_001]

Coordinates

chr7:+:26070503..26071429

Molecular Weight (calculated)

29284.1 Da

IEP (calculated)

6.671

GRAVY (calculated)

0.277

Length

284 amino acids

Sequence
(BLAST)

001: MESGKFVIAA QEAEAMAKTA GVAALKELLP LLVPTALRLA RPPISNYPVG AVGLGMSGRI FLGVNLEFPG LPLNHSVHAE QFVVANAAAH GEAGISCIAV
101: SSFPCGHCRQ FLQEIRGAGE IQIVVTSDDD AAFRPLSSLL PHRFGPFDLL HKGIPLLLEP HDNDLGSRLR AAAGAAAKAS HAPYSGCAAG FAVADGEGRV
201: YAGSYMESAA YNPSLGPVQA AMVGYVAACG GVGGEHRGWG IFAAALVEKE AAAVSHEGTA RIFLEAVAPG ANLNVYRFRS SATV

Best Arabidopsis Sequence Match ( AT2G19570.1 )
(BLAST)

001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A

Arabidopsis Description

CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.