Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY30209 | Canola | cytosol | 90.73 | 97.93 |
Bra024140.1-P | Field mustard | cytosol | 92.01 | 93.81 |
CDY58323 | Canola | cytosol | 72.2 | 76.87 |
CDY65102 | Canola | cytosol | 71.57 | 76.19 |
HORVU3Hr1G020270.1 | Barley | extracellular, peroxisome | 14.06 | 61.97 |
VIT_11s0016g02340.t01 | Wine grape | cytosol | 59.42 | 60.59 |
HORVU4Hr1G074340.1 | Barley | extracellular, peroxisome | 13.74 | 60.56 |
KRH60135 | Soybean | cytosol | 56.55 | 60.41 |
KRH49056 | Soybean | plastid | 53.35 | 60.07 |
CDY30210 | Canola | cytosol | 53.35 | 59.86 |
CDY54269 | Canola | cytosol | 52.72 | 59.14 |
HORVU5Hr1G034090.1 | Barley | mitochondrion | 8.31 | 59.09 |
HORVU5Hr1G075600.1 | Barley | mitochondrion | 8.31 | 59.09 |
KRH41424 | Soybean | plasma membrane | 52.08 | 58.84 |
GSMUA_Achr7P24040_001 | Banana | cytosol | 50.8 | 55.99 |
GSMUA_Achr3P32380_001 | Banana | cytosol | 35.78 | 54.37 |
HORVU4Hr1G083900.1 | Barley | cytosol, mitochondrion, plastid | 23.32 | 52.52 |
PGSC0003DMT400020044 | Potato | cytosol | 54.31 | 52.47 |
Solyc07g021750.1.1 | Tomato | cytosol | 53.67 | 51.53 |
KRH63089 | Soybean | cytosol | 30.35 | 51.08 |
HORVU3Hr1G067290.1 | Barley | cytosol | 48.88 | 49.35 |
Zm00001d011710_P001 | Maize | cytosol, extracellular | 48.56 | 48.72 |
TraesCS3D01G249300.1 | Wheat | cytosol | 48.24 | 48.71 |
TraesCS3B01G278200.1 | Wheat | cytosol | 48.24 | 48.71 |
TraesCS3A01G249300.1 | Wheat | cytosol | 48.24 | 48.71 |
Os01t0712700-01 | Rice | cytosol | 47.92 | 48.08 |
Zm00001d043674_P001 | Maize | cytosol | 48.24 | 47.78 |
HORVU4Hr1G036900.1 | Barley | cytosol, extracellular, mitochondrion | 22.04 | 46.31 |
EES03512 | Sorghum | cytosol | 46.65 | 46.2 |
CDY54272 | Canola | cytosol | 40.58 | 45.52 |
Os06t0611600-00 | Rice | mitochondrion | 30.35 | 45.24 |
CDY54275 | Canola | mitochondrion | 38.02 | 41.61 |
GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, golgi | 44.41 | 35.1 |
OQU91901 | Sorghum | cytosol, plastid | 21.73 | 22.82 |
Protein Annotations
KEGG:00240+3.5.4.5 | KEGG:00983+3.5.4.5 | Gene3D:3.40.140.10 | MapMan:6.2.4.2 | GO:A0A078IW90 | UniProt:A0A078IW90 |
InterPro:APOBEC/CMP_deaminase_Zn-bd | EnsemblPlants:CDY54276 | ProteinID:CDY54276 | ProteinID:CDY54276.1 | InterPro:CMP_dCMP_dom | ncoils:Coil |
InterPro:Cyd/dCyd_deaminase_Zn-bd | InterPro:Cyt_deam_dimer | InterPro:Cytidine_deaminase-like | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004126 |
GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
GO:GO:0009972 | GO:GO:0009987 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00013753001 | InterPro:IPR002125 | PFAM:PF00383 |
PFAM:PF08211 | PIRSF:PIRSF006334 | ScanProsite:PS00903 | PFscan:PS51747 | PANTHER:PTHR11644 | PANTHER:PTHR11644:SF2 |
MetaCyc:PWY-6556 | MetaCyc:PWY-7181 | MetaCyc:PWY-7193 | MetaCyc:PWY-7199 | SUPFAM:SSF53927 | TIGRFAMs:TIGR01355 |
UniParc:UPI0004EECBD0 | SEG:seg | : | : | : | : |
Description
BnaC07g50780DBnaC07g50780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IW90]
Coordinates
chrLK033298:+:31365..32616
Molecular Weight (calculated)
34173.6 Da
IEP (calculated)
5.918
GRAVY (calculated)
-0.162
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRPSFLIHA EEAESAAKRH GVSVVNLLPL LVNPAKPLAR PPISKFPVAA VGLGSSGRIF VGVNVEFPGL PLHHSIHAEQ FLVANLTLNS EPNLRHFSVS
101: AAPCGHCRQF LQEIRDAPDI KILITDPNAF RDAVNENEND ANENDAVKNE NDAVKNKEED GYVRLESILP HRFGPNDLLE RDVPLLLEPH DNRLTILGVT
201: NGHTDSDLKL TALAAANRSY APYSRCPSGV ALVDCEGRVY RGWYMESAAY NPSLGPVQAA LVDFVANGGG GGFERIVGAV LVEKRDAVVR QEHTARMLLQ
301: VIAPKCDFEV FHC
101: AAPCGHCRQF LQEIRDAPDI KILITDPNAF RDAVNENEND ANENDAVKNE NDAVKNKEED GYVRLESILP HRFGPNDLLE RDVPLLLEPH DNRLTILGVT
201: NGHTDSDLKL TALAAANRSY APYSRCPSGV ALVDCEGRVY RGWYMESAAY NPSLGPVQAA LVDFVANGGG GGFERIVGAV LVEKRDAVVR QEHTARMLLQ
301: VIAPKCDFEV FHC
001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A
Arabidopsis Description
CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.