Factsheet for PGSC0003DMT400020044

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g021750.1.1	Tomato	cytosol	91.05	90.49
HORVU3Hr1G020270.1	Barley	extracellular, peroxisome	13.58	61.97
VIT_11s0016g02340.t01	Wine grape	cytosol	58.02	61.24
HORVU5Hr1G075600.1	Barley	mitochondrion	8.02	59.09
HORVU5Hr1G034090.1	Barley	mitochondrion	8.02	59.09
KRH49056	Soybean	plastid	50.31	58.63
Bra039004.1-P	Field mustard	cytosol	52.78	58.36
CDY30209	Canola	cytosol	52.16	58.28
CDY65102	Canola	cytosol	52.47	57.82
CDY58323	Canola	cytosol	52.47	57.82
HORVU4Hr1G074340.1	Barley	extracellular, peroxisome	12.65	57.75
KRH60135	Soybean	cytosol	52.16	57.68
AT2G19570.1	Thale cress	cytosol	52.47	56.48
GSMUA_Achr7P24040_001	Banana	cytosol	49.38	56.34
KRH41424	Soybean	plasma membrane	48.15	56.32
Bra024140.1-P	Field mustard	cytosol	52.47	55.37
CDY54276	Canola	cytosol	52.47	54.31
Bra024141.1-P	Field mustard	cytosol	43.52	50.54
CDY30210	Canola	cytosol	43.52	50.54
GSMUA_Achr3P32380_001	Banana	cytosol	32.1	50.49
CDY54269	Canola	cytosol	42.9	49.82
HORVU4Hr1G083900.1	Barley	cytosol, mitochondrion, plastid	20.99	48.92
AT4G29610.1	Thale cress	cytosol	43.83	48.46
Os01t0712700-01	Rice	cytosol	46.3	48.08
Zm00001d011710_P001	Maize	cytosol, extracellular	46.3	48.08
KRH63089	Soybean	cytosol	27.47	47.85
AT4G29650.1	Thale cress	cytosol	37.04	47.81
HORVU3Hr1G067290.1	Barley	cytosol	45.68	47.74
AT4G29600.1	Thale cress	cytosol	45.06	47.56
TraesCS3B01G278200.1	Wheat	cytosol	45.37	47.42
TraesCS3A01G249300.1	Wheat	cytosol	45.06	47.1
TraesCS3D01G249300.1	Wheat	cytosol	44.75	46.77
EES03512	Sorghum	cytosol	45.06	46.2
Zm00001d043674_P001	Maize	cytosol	44.75	45.89
AT4G29630.1	Thale cress	cytosol	30.86	44.84
HORVU4Hr1G036900.1	Barley	cytosol, extracellular, mitochondrion	20.37	44.3
Os06t0611600-00	Rice	mitochondrion	27.78	42.86
AT4G29620.1	Thale cress	cytosol	41.98	40.36
AT4G29570.1	Thale cress	cytosol	36.42	40.27
CDY54272	Canola	cytosol	32.1	37.28
AT4G29640.1	Thale cress	cytosol	38.89	36.42
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, golgi	43.83	35.86
CDY54275	Canola	mitochondrion	31.48	35.66
AT4G29580.2	Thale cress	nucleus	34.57	25.17
OQU91901	Sorghum	cytosol, plastid	18.21	19.8

Protein Annotations

KEGG:00240+3.5.4.5	KEGG:00983+3.5.4.5	EntrezGene:102592443	Gene3D:3.40.140.10	MapMan:6.2.4.2	InterPro:APOBEC/CMP_deaminase_Zn-bd
InterPro:CMP_dCMP_dom	InterPro:Cyd/dCyd_deaminase_Zn-bd	InterPro:Cyt_deam_dimer	InterPro:Cytidine_deaminase-like	GO:GO:0003674	GO:GO:0003824
GO:GO:0004126	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009972	GO:GO:0009987	GO:GO:0016787	InterPro:IPR002125	UniProt:M1ACX7
PFAM:PF00383	PFAM:PF08211	EnsemblPlantsGene:PGSC0003DMG400007756	PGSC:PGSC0003DMG400007756	EnsemblPlants:PGSC0003DMT400020044	PIRSF:PIRSF006334
ScanProsite:PS00903	PFscan:PS51747	PANTHER:PTHR11644	PANTHER:PTHR11644:SF2	SUPFAM:SSF53927	TIGRFAMs:TIGR01355
UniParc:UPI00029633C9	RefSeq:XP_006346555.1	SEG:seg	:	:	:

Description

Cytidine deaminase 1, 2, 7 [Source:PGSC_GENE;Acc:PGSC0003DMG400007756]

Coordinates

chr7:+:33679523..33680754

Molecular Weight (calculated)

35239.0 Da

IEP (calculated)

5.819

GRAVY (calculated)

-0.093

Length

324 amino acids

Sequence
(BLAST)

001: MDQLKFVVEA SEAESITHKL GLPSVHHLLP VLVQPAQTLA RPPISNYHVA AVGLGSDGRV FLGVNLEFPG LPLHHSVHAE QFLITNLAVH RCPRLVAFAV
101: SAAPCGHCRQ FLQELRNPSD LQIHITSQHQ NNPNVTFEPL REILPNPFGP FDLLDDETPL LLERHNNGLI LSYEINHDGD LCNGFSDDDL KSGNLSNGFY
201: KLTETESTLL RIAALEGAND SHAPYSGCPS GVAIMDYEGK IYRGSYVESA AYNPSLGPVQ AALVAFVAEG GGGYERIVAA ALVEKEGAKV RQEDTARIFL
301: KLVSPKCDLK VFHCCVAENG CKKD

Best Arabidopsis Sequence Match ( AT2G19570.1 )
(BLAST)

001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A

Arabidopsis Description

CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.