Factsheet for Os06t0611600-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G075600.1	Barley	mitochondrion	14.76	70.45
HORVU5Hr1G034090.1	Barley	mitochondrion	14.76	70.45
HORVU3Hr1G020270.1	Barley	extracellular, peroxisome	23.33	69.01
HORVU4Hr1G074340.1	Barley	extracellular, peroxisome	22.86	67.61
HORVU4Hr1G083900.1	Barley	cytosol, mitochondrion, plastid	41.9	63.31
HORVU4Hr1G036900.1	Barley	cytosol, extracellular, mitochondrion	38.57	54.36
Os01t0712700-01	Rice	cytosol	74.76	50.32
TraesCS3D01G249300.1	Wheat	cytosol	67.14	45.48
TraesCS3B01G278200.1	Wheat	cytosol	67.14	45.48
TraesCS3A01G249300.1	Wheat	cytosol	66.67	45.16
HORVU3Hr1G067290.1	Barley	cytosol	66.67	45.16
EES03512	Sorghum	cytosol	65.24	43.35
Zm00001d011710_P001	Maize	cytosol, extracellular	64.29	43.27
GSMUA_Achr3P32380_001	Banana	cytosol	42.38	43.2
Zm00001d043674_P001	Maize	cytosol	64.76	43.04
GSMUA_Achr7P24040_001	Banana	cytosol	55.71	41.2
KRH63089	Soybean	cytosol	33.33	37.63
AT4G29630.1	Thale cress	cytosol	38.1	35.87
KRH60135	Soybean	cytosol	45.24	32.42
Bra039004.1-P	Field mustard	cytosol	45.24	32.42
CDY30209	Canola	cytosol	44.76	32.41
KRH49056	Soybean	plastid	42.86	32.37
CDY58323	Canola	cytosol	45.24	32.31
CDY65102	Canola	cytosol	44.76	31.97
VIT_11s0016g02340.t01	Wine grape	cytosol	44.76	30.62
Bra024140.1-P	Field mustard	cytosol	44.76	30.62
CDY54276	Canola	cytosol	45.24	30.35
KRH41424	Soybean	plasma membrane	40.0	30.32
AT2G19570.1	Thale cress	cytosol	42.86	29.9
Solyc07g021750.1.1	Tomato	cytosol	43.81	28.22
PGSC0003DMT400020044	Potato	cytosol	42.86	27.78
AT4G29610.1	Thale cress	cytosol	38.1	27.3
Bra024141.1-P	Field mustard	cytosol	35.71	26.88
CDY30210	Canola	cytosol	35.71	26.88
CDY54269	Canola	cytosol	35.71	26.88
AT4G29600.1	Thale cress	cytosol	39.05	26.71
AT4G29650.1	Thale cress	cytosol	28.1	23.51
CDY54272	Canola	cytosol	30.95	23.3
AT4G29570.1	Thale cress	cytosol	32.38	23.21
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, golgi	43.33	22.98
AT4G29620.1	Thale cress	cytosol	36.19	22.55
CDY54275	Canola	mitochondrion	30.0	22.03
AT4G29640.1	Thale cress	cytosol	33.33	20.23
OQU91901	Sorghum	cytosol, plastid	26.19	18.46
AT4G29580.2	Thale cress	nucleus	31.43	14.83

Protein Annotations

KEGG:00240+3.5.4.5	KEGG:00983+3.5.4.5	Gene3D:3.40.140.10	MapMan:6.2.4.2	UniProt:A0A0P0WYM0	InterPro:APOBEC/CMP_deaminase_Zn-bd
ProteinID:BAS98595.1	InterPro:CMP_dCMP_dom	InterPro:Cyd/dCyd_deaminase_Zn-bd	InterPro:Cytidine_deaminase-like	GO:GO:0003674	GO:GO:0003824
GO:GO:0004126	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009972	GO:GO:0009987	GO:GO:0016787	InterPro:IPR002125	EnsemblPlantsGene:Os06g0611600
EnsemblPlants:Os06t0611600-00	PFAM:PF00383	PFAM:PF08211	PIRSF:PIRSF006334	ScanProsite:PS00903	PFscan:PS51747
SUPFAM:SSF53927	TMHMM:TMhelix	UniParc:UPI000393B1DD	SEG:seg	:	:

Description

Similar to CDA1. (Os06t0611600-00)

Coordinates

chr6:+:24388239..24389073

Molecular Weight (calculated)

22659.6 Da

IEP (calculated)

10.681

GRAVY (calculated)

0.080

Length

210 amino acids

Sequence
(BLAST)

001: WTLLKRFTLL VPSAMRRARV PISRFPVGAV GLGMSGCIYA SVNLEFRGLP LSHSIHAEQF LVVNAAAVGK SKLCAIAISH MPCGHCRQFL QEIRGAGGIR
101: IIVTSSDAKW RTVSSLLPRP FGPHDLLPKH VPLVLKPHDS PLVGNPATAV ITNGFANGDL EARLREAAEA AARAAHTPYS ECPSRFAVAD GEGRVYAGGY
201: AWSPRRIIRH

Best Arabidopsis Sequence Match ( AT2G19570.1 )
(BLAST)

001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A

Arabidopsis Description

CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.