Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G083900.1 | Barley | cytosol, mitochondrion, plastid | 81.21 | 87.05 |
| HORVU4Hr1G074340.1 | Barley | extracellular, peroxisome | 40.27 | 84.51 |
| HORVU3Hr1G020270.1 | Barley | extracellular, peroxisome | 38.26 | 80.28 |
| HORVU5Hr1G075600.1 | Barley | mitochondrion | 23.49 | 79.55 |
| HORVU5Hr1G034090.1 | Barley | mitochondrion | 23.49 | 79.55 |
| Os06t0611600-00 | Rice | mitochondrion | 54.36 | 38.57 |
| GSMUA_Achr3P32380_001 | Banana | cytosol | 51.68 | 37.38 |
| TraesCS3D01G249300.1 | Wheat | cytosol | 75.17 | 36.13 |
| TraesCS3B01G278200.1 | Wheat | cytosol | 75.17 | 36.13 |
| TraesCS3A01G249300.1 | Wheat | cytosol | 75.17 | 36.13 |
| HORVU3Hr1G067290.1 | Barley | cytosol | 75.17 | 36.13 |
| Os01t0712700-01 | Rice | cytosol | 67.11 | 32.05 |
| Zm00001d011710_P001 | Maize | cytosol, extracellular | 64.43 | 30.77 |
| KRH63089 | Soybean | cytosol | 38.26 | 30.65 |
| Zm00001d043674_P001 | Maize | cytosol | 64.43 | 30.38 |
| EES03512 | Sorghum | cytosol | 61.74 | 29.11 |
| GSMUA_Achr7P24040_001 | Banana | cytosol | 53.69 | 28.17 |
| KRH60135 | Soybean | cytosol | 48.99 | 24.91 |
| AT4G29630.1 | Thale cress | cytosol | 36.24 | 24.22 |
| KRH49056 | Soybean | plastid | 44.97 | 24.1 |
| CDY30209 | Canola | cytosol | 46.31 | 23.79 |
| VIT_11s0016g02340.t01 | Wine grape | cytosol | 48.99 | 23.78 |
| Bra039004.1-P | Field mustard | cytosol | 46.31 | 23.55 |
| CDY58323 | Canola | cytosol | 46.31 | 23.47 |
| CDY65102 | Canola | cytosol | 46.31 | 23.47 |
| Bra024140.1-P | Field mustard | cytosol | 46.98 | 22.8 |
| KRH41424 | Soybean | plasma membrane | 42.28 | 22.74 |
| CDY54276 | Canola | cytosol | 46.31 | 22.04 |
| AT2G19570.1 | Thale cress | cytosol | 44.3 | 21.93 |
| CDY30210 | Canola | cytosol | 40.94 | 21.86 |
| Bra024141.1-P | Field mustard | cytosol | 40.94 | 21.86 |
| CDY54269 | Canola | cytosol | 40.27 | 21.51 |
| AT4G29610.1 | Thale cress | cytosol | 40.27 | 20.48 |
| PGSC0003DMT400020044 | Potato | cytosol | 44.3 | 20.37 |
| Solyc07g021750.1.1 | Tomato | cytosol | 44.3 | 20.25 |
| AT4G29600.1 | Thale cress | cytosol | 38.93 | 18.89 |
| CDY54272 | Canola | cytosol | 32.89 | 17.56 |
| AT4G29570.1 | Thale cress | cytosol | 32.21 | 16.38 |
| CDY54275 | Canola | mitochondrion | 30.87 | 16.08 |
| AT4G29620.1 | Thale cress | cytosol | 36.24 | 16.02 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, golgi | 41.61 | 15.66 |
| AT4G29640.1 | Thale cress | cytosol | 34.9 | 15.03 |
| OQU91901 | Sorghum | cytosol, plastid | 29.53 | 14.77 |
| AT4G29650.1 | Thale cress | cytosol | 22.15 | 13.15 |
| AT4G29580.2 | Thale cress | nucleus | 28.86 | 9.66 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G036900.1 | EnsemblPlantsGene:HORVU4Hr1G036900 | Gene3D:3.40.140.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008270 | GO:GO:0016787 | InterPro:APOBEC/CMP_deaminase_Zn-bd | InterPro:CMP_dCMP_dom | InterPro:Cytidine_deaminase-like | InterPro:IPR002125 |
| PANTHER:PTHR11644 | PANTHER:PTHR11644:SF2 | PFAM:PF00383 | PFscan:PS51747 | ScanProsite:PS00903 | SEG:seg |
| SUPFAM:SSF53927 | UniParc:UPI000B473C1C | UniProt:A0A287NTD1 | MapMan:6.2.4.2 | : | : |
Description
No Description!
Coordinates
chrchr4H:+:274075229..274080021
Molecular Weight (calculated)
15447.7 Da
IEP (calculated)
8.107
GRAVY (calculated)
0.115
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRAPPPPIS RIPVGAVGLG ESGRVYAGMN PDFLGSPLSK AVHAEQFLIG NAAAVVEPAL RVIAVSHMPC SHCRQFLQEI RGAAGIRILV TSDAADGCAA
101: EWRMLASLLP RPFGPHDLLP KDAPSSSSHT TTASAIPSMT SPMASPSAT
101: EWRMLASLLP RPFGPHDLLP KDAPSSSSHT TTASAIPSMT SPMASPSAT
001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A
Arabidopsis Description
CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.