Factsheet for HORVU4Hr1G083900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G075600.1	Barley	mitochondrion	30.22	95.45
HORVU5Hr1G034090.1	Barley	mitochondrion	30.22	95.45
HORVU3Hr1G020270.1	Barley	extracellular, peroxisome	45.32	88.73
HORVU4Hr1G074340.1	Barley	extracellular, peroxisome	43.88	85.92
HORVU4Hr1G036900.1	Barley	cytosol, extracellular, mitochondrion	87.05	81.21
Os06t0611600-00	Rice	mitochondrion	63.31	41.9
GSMUA_Achr3P32380_001	Banana	cytosol	57.55	38.84
HORVU3Hr1G067290.1	Barley	cytosol	85.61	38.39
TraesCS3B01G278200.1	Wheat	cytosol	84.89	38.06
TraesCS3D01G249300.1	Wheat	cytosol	84.17	37.74
TraesCS3A01G249300.1	Wheat	cytosol	84.17	37.74
Os01t0712700-01	Rice	cytosol	74.1	33.01
Zm00001d011710_P001	Maize	cytosol, extracellular	71.94	32.05
Zm00001d043674_P001	Maize	cytosol	71.94	31.65
KRH63089	Soybean	cytosol	41.01	30.65
EES03512	Sorghum	cytosol	68.35	30.06
GSMUA_Achr7P24040_001	Banana	cytosol	58.27	28.52
KRH60135	Soybean	cytosol	55.4	26.28
AT4G29630.1	Thale cress	cytosol	41.01	25.56
Bra039004.1-P	Field mustard	cytosol	52.52	24.91
CDY58323	Canola	cytosol	52.52	24.83
CDY65102	Canola	cytosol	52.52	24.83
CDY30209	Canola	cytosol	51.8	24.83
KRH49056	Soybean	plastid	48.92	24.46
VIT_11s0016g02340.t01	Wine grape	cytosol	53.96	24.43
Bra024140.1-P	Field mustard	cytosol	52.52	23.78
CDY54276	Canola	cytosol	52.52	23.32
KRH41424	Soybean	plasma membrane	46.04	23.1
AT2G19570.1	Thale cress	cytosol	48.92	22.59
CDY30210	Canola	cytosol	43.88	21.86
Bra024141.1-P	Field mustard	cytosol	43.88	21.86
AT4G29610.1	Thale cress	cytosol	46.04	21.84
CDY54269	Canola	cytosol	43.17	21.51
PGSC0003DMT400020044	Potato	cytosol	48.92	20.99
Solyc07g021750.1.1	Tomato	cytosol	48.92	20.86
AT4G29600.1	Thale cress	cytosol	43.17	19.54
CDY54272	Canola	cytosol	34.53	17.2
OQU91901	Sorghum	cytosol, plastid	36.69	17.11
AT4G29620.1	Thale cress	cytosol	41.01	16.91
AT4G29570.1	Thale cress	cytosol	35.25	16.72
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, golgi	45.32	15.91
CDY54275	Canola	mitochondrion	32.37	15.73
AT4G29650.1	Thale cress	cytosol	26.62	14.74
AT4G29640.1	Thale cress	cytosol	36.69	14.74
AT4G29580.2	Thale cress	nucleus	30.94	9.66

Protein Annotations

EnsemblPlants:HORVU4Hr1G083900.1	EnsemblPlantsGene:HORVU4Hr1G083900	Gene3D:3.40.140.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008270	GO:GO:0016787	InterPro:APOBEC/CMP_deaminase_Zn-bd	InterPro:CMP_dCMP_dom	InterPro:Cytidine_deaminase-like	InterPro:IPR002125
PANTHER:PTHR11644	PANTHER:PTHR11644:SF2	PFAM:PF00383	PFscan:PS51747	ScanProsite:PS00903	SEG:seg
SUPFAM:SSF53927	UniParc:UPI000B469661	UniProt:A0A287PX15	MapMan:6.2.4.2	:	:

Description

No Description!

Coordinates

chrchr4H:-:626872697..626873655

Molecular Weight (calculated)

14481.4 Da

IEP (calculated)

8.108

GRAVY (calculated)

0.156

Length

139 amino acids

Sequence
(BLAST)

001: MQRARPPISR FSVGAVGLGE SGRVYAGVNL DFLGAPLSQA VHAEQFLIAN AAAVGEPTLR VIVVSHMPCG HCRQFLQEIR GAAGIRILVT SDAADGCAAE
101: WRTLASLLPR PFGPHDLLPK DAPSSSSHTT TASAIPSAT

Best Arabidopsis Sequence Match ( AT2G19570.1 )
(BLAST)

001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A

Arabidopsis Description

CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.