Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G249300.1 | Wheat | cytosol | 98.71 | 98.71 |
| TraesCS3A01G249300.1 | Wheat | cytosol | 97.74 | 97.74 |
| HORVU3Hr1G067290.1 | Barley | cytosol | 95.81 | 95.81 |
| HORVU5Hr1G075600.1 | Barley | mitochondrion | 12.9 | 90.91 |
| HORVU5Hr1G034090.1 | Barley | mitochondrion | 12.9 | 90.91 |
| HORVU4Hr1G074340.1 | Barley | extracellular, peroxisome | 20.32 | 88.73 |
| HORVU3Hr1G020270.1 | Barley | extracellular, peroxisome | 20.0 | 87.32 |
| HORVU4Hr1G083900.1 | Barley | cytosol, mitochondrion, plastid | 38.06 | 84.89 |
| Os01t0712700-01 | Rice | cytosol | 80.0 | 79.49 |
| Zm00001d011710_P001 | Maize | cytosol, extracellular | 76.45 | 75.96 |
| Zm00001d043674_P001 | Maize | cytosol | 77.42 | 75.95 |
| EES03512 | Sorghum | cytosol | 77.1 | 75.63 |
| HORVU4Hr1G036900.1 | Barley | cytosol, extracellular, mitochondrion | 36.13 | 75.17 |
| Os06t0611600-00 | Rice | mitochondrion | 45.48 | 67.14 |
| GSMUA_Achr7P24040_001 | Banana | cytosol | 55.48 | 60.56 |
| GSMUA_Achr3P32380_001 | Banana | cytosol | 37.42 | 56.31 |
| CDY30209 | Canola | cytosol | 48.06 | 51.38 |
| Bra039004.1-P | Field mustard | cytosol | 48.39 | 51.19 |
| CDY58323 | Canola | cytosol | 48.06 | 50.68 |
| KRH60135 | Soybean | cytosol | 47.74 | 50.51 |
| KRH49056 | Soybean | plastid | 44.84 | 50.0 |
| CDY65102 | Canola | cytosol | 47.42 | 50.0 |
| KRH41424 | Soybean | plasma membrane | 43.87 | 49.1 |
| VIT_11s0016g02340.t01 | Wine grape | cytosol | 48.39 | 48.86 |
| Bra024140.1-P | Field mustard | cytosol | 48.39 | 48.86 |
| CDY54276 | Canola | cytosol | 48.71 | 48.24 |
| AT2G19570.1 | Thale cress | cytosol | 45.16 | 46.51 |
| PGSC0003DMT400020044 | Potato | cytosol | 47.42 | 45.37 |
| Solyc07g021750.1.1 | Tomato | cytosol | 46.45 | 44.17 |
| CDY30210 | Canola | cytosol | 39.03 | 43.37 |
| Bra024141.1-P | Field mustard | cytosol | 39.03 | 43.37 |
| AT4G29610.1 | Thale cress | cytosol | 40.97 | 43.34 |
| CDY54269 | Canola | cytosol | 38.71 | 43.01 |
| AT4G29630.1 | Thale cress | cytosol | 30.65 | 42.6 |
| KRH63089 | Soybean | cytosol | 25.48 | 42.47 |
| AT4G29600.1 | Thale cress | cytosol | 40.97 | 41.37 |
| AT4G29650.1 | Thale cress | cytosol | 31.94 | 39.44 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, golgi | 49.68 | 38.89 |
| AT4G29570.1 | Thale cress | cytosol | 33.87 | 35.84 |
| AT4G29620.1 | Thale cress | cytosol | 38.06 | 35.01 |
| CDY54272 | Canola | cytosol | 30.97 | 34.41 |
| AT4G29640.1 | Thale cress | cytosol | 37.42 | 33.53 |
| CDY54275 | Canola | mitochondrion | 28.06 | 30.42 |
| OQU91901 | Sorghum | cytosol, plastid | 26.45 | 27.52 |
| AT4G29580.2 | Thale cress | nucleus | 30.0 | 20.9 |
Protein Annotations
| KEGG:00240+3.5.4.5 | KEGG:00983+3.5.4.5 | Gene3D:3.40.140.10 | MapMan:6.2.4.2 | InterPro:APOBEC/CMP_deaminase_Zn-bd | InterPro:CMP_dCMP_dom |
| ncoils:Coil | InterPro:Cyd/dCyd_deaminase_Zn-bd | InterPro:Cyt_deam_dimer | InterPro:Cytidine_deaminase-like | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004126 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009972 | GO:GO:0009987 | GO:GO:0016787 | InterPro:IPR002125 | PFAM:PF00383 |
| PFAM:PF08211 | PIRSF:PIRSF006334 | ScanProsite:PS00903 | PFscan:PS51747 | SUPFAM:SSF53927 | TIGRFAMs:TIGR01355 |
| EnsemblPlantsGene:TraesCS3B01G278200 | EnsemblPlants:TraesCS3B01G278200.1 | TIGR:cd01283 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3B:+:448479142..448480074
Molecular Weight (calculated)
31766.8 Da
IEP (calculated)
4.730
GRAVY (calculated)
0.176
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEERMTAKP EAVELPGFVM SADEAERAAA AAGVETVEDL LPLLIPSAMR RARPPISRFP VGAVGLGESG RVYAGVNLEF LGAPLSQVVH AEQFLIANAA
101: AAGEPALRAI AVSHMPCGHC RQFLQEIRGA AGIRILVTSD AADGCAAEWR TLASLLPRPF GPHDLLPKDA PLVLEPHDNR LGDPVDAVAN GFAADDLEGR
201: LKDAAEAAAR AAHAPYSGCP SGFAVADGEG KVYAGGCLES AAYNPTLGPV QTAIIAMIAA GGGSAGDVVA AALVEKDGAV AAQEATARVF LAAVAPQASF
301: HVYKYRSSDV
101: AAGEPALRAI AVSHMPCGHC RQFLQEIRGA AGIRILVTSD AADGCAAEWR TLASLLPRPF GPHDLLPKDA PLVLEPHDNR LGDPVDAVAN GFAADDLEGR
201: LKDAAEAAAR AAHAPYSGCP SGFAVADGEG KVYAGGCLES AAYNPTLGPV QTAIIAMIAA GGGSAGDVVA AALVEKDGAV AAQEATARVF LAAVAPQASF
301: HVYKYRSSDV
001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A
Arabidopsis Description
CDA1Cytidine deaminase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65896]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.